U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Iqcn IQ motif containing N [ Rattus norvegicus (Norway rat) ]

    Gene ID: 102547294, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Symbol
    Iqcnprovided by RGD
    Full Name
    IQ motif containing Nprovided by RGD
    Primary source
    RGD:7549926
    See related
    EnsemblRapid:ENSRNOG00000068146 AllianceGenome:RGD:7549926
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be involved in spermatid development. Predicted to be located in mitochondrion. Human ortholog(s) of this gene implicated in spermatogenic failure 78. Orthologous to human IQCN (IQ motif containing N). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 75.5) See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Iqcn in Genome Data Viewer
    Location:
    16p14
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (18750492..18766184, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (18716519..18733971, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (20467425..20483375, complement)

    Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 4C Neighboring gene colon, intestine and stomach enriched 1 Neighboring gene JunD proto-oncogene, AP-1 transcription factor subunit Neighboring gene uncharacterized LOC134482471 Neighboring gene LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Proteomic characterization of the human sperm nucleus. de Mateo S, et al. Proteomics, 2011 Jul. PMID 21630459

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in spermatid development ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    IQ domain-containing protein N
    Names
    mucin-17-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001399437.1 → NP_001386366.1  IQ domain-containing protein N

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000016
      UniProtKB/TrEMBL
      A0A8I6GGC3
      Related
      ENSRNOP00000088555.2, ENSRNOT00000097349.2
      Conserved Domains (2) summary
      smart00015
      Location:1220 → 1236
      IQ; Calmodulin-binding motif
      pfam05109
      Location:250 → 577
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086034.1 Reference GRCr8

      Range
      18750492..18766184 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063274975.1 → XP_063131045.1  IQ domain-containing protein N isoform X3

    2. XM_063274974.1 → XP_063131044.1  IQ domain-containing protein N isoform X2

      UniProtKB/TrEMBL
      A0A8I6GGC3

    3. XM_006252973.5 → XP_006253035.2  IQ domain-containing protein N isoform X1

      UniProtKB/TrEMBL
      A6KA10
      Conserved Domains (3) summary
      smart00015
      Location:3001 → 3017
      IQ; Calmodulin-binding motif
      PHA03247
      Location:1562 → 1841
      PHA03247; large tegument protein UL36; Provisional
      PRK10263
      Location:1696 → 2000
      PRK10263; DNA translocase FtsK; Provisional

    4. XM_017600334.3 → XP_017455823.1  IQ domain-containing protein N isoform X3

      Conserved Domains (1) summary
      smart00015
      Location:832 → 848
      IQ; Calmodulin-binding motif

    5. XM_006252972.5 → XP_006253034.2  IQ domain-containing protein N isoform X1

      UniProtKB/TrEMBL
      A6KA10
      Related
      ENSRNOP00000105486.1, ENSRNOT00000143459.1
      Conserved Domains (3) summary
      smart00015
      Location:3001 → 3017
      IQ; Calmodulin-binding motif
      PHA03247
      Location:1562 → 1841
      PHA03247; large tegument protein UL36; Provisional
      PRK10263
      Location:1696 → 2000
      PRK10263; DNA translocase FtsK; Provisional

    6. XM_063274976.1 → XP_063131046.1  IQ domain-containing protein N isoform X3

    7. XM_063274973.1 → XP_063131043.1  IQ domain-containing protein N isoform X2

      UniProtKB/TrEMBL
      A0A8I6GGC3

    8. XM_006252974.5 → XP_006253036.2  IQ domain-containing protein N isoform X1

      UniProtKB/TrEMBL
      A6KA10
      Related
      ENSRNOP00000107738.1, ENSRNOT00000156938.1
      Conserved Domains (3) summary
      smart00015
      Location:3001 → 3017
      IQ; Calmodulin-binding motif
      PHA03247
      Location:1562 → 1841
      PHA03247; large tegument protein UL36; Provisional
      PRK10263
      Location:1696 → 2000
      PRK10263; DNA translocase FtsK; Provisional
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials