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    Tmem89 transmembrane protein 89 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 501056, updated on 9-Dec-2024

    Summary

    Official Symbol
    Tmem89provided by RGD
    Official Full Name
    transmembrane protein 89provided by RGD
    Primary source
    RGD:1564575
    See related
    EnsemblRapid:ENSRNOG00000031141 AllianceGenome:RGD:1564575
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1564575
    Summary
    Orthologous to human TMEM89 (transmembrane protein 89). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 100.9) See more
    Orthologs
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    Genomic context

    See Tmem89 in Genome Data Viewer
    Location:
    8q32
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (118449870..118450764)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (109571377..109572271)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (117660975..117661869)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene NCK interacting protein with SH3 domain Neighboring gene cadherin, EGF LAG seven-pass G-type receptor 3 Neighboring gene solute carrier family 26 member 6 Neighboring gene U2 spliceosomal RNA Neighboring gene ubiquinol-cytochrome c reductase core protein 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001163477.1NP_001156949.1  transmembrane protein 89 precursor

      See identical proteins and their annotated locations for NP_001156949.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000008
      UniProtKB/TrEMBL
      A6I394, D3ZLN5
      Related
      ENSRNOP00000046724.3, ENSRNOT00000049240.7
      Conserved Domains (1) summary
      pfam15098
      Location:23155
      TMEM89; TMEM89 protein family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      118449870..118450764
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)