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    Shisal1 shisa like 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 500913, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Shisal1provided by RGD
    Official Full Name
    shisa like 1provided by RGD
    Primary source
    RGD:1566029
    See related
    EnsemblRapid:ENSRNOG00000078763 AllianceGenome:RGD:1566029
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1566029
    Summary
    Predicted to be located in membrane. Orthologous to human SHISAL1 (shisa like 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 23.8), Heart (RPKM 8.4) and 6 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Shisal1 in Genome Data Viewer
    Location:
    7q34
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (117388210..117491539, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (115506947..115611518, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (125339153..125408029, complement)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA48 Neighboring gene parvin, gamma Neighboring gene retrotransposon Gag like 6 Neighboring gene basic transcription factor 3 like 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    protein shisa-like-1; shisa like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001432011.1 → NP_001418940.1  shisa like 1 precursor

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000007

    2. NM_001432012.1 → NP_001418941.1  shisa like 1 precursor

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000007

    3. NM_001432013.1 → NP_001418942.1  shisa like 1 precursor

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000007

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      117388210..117491539 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039080314.2 → XP_038936242.1  protein shisa-like-1 isoform X1

      Conserved Domains (1) summary
      pfam13908
      Location:31 → 71
      Shisa; Wnt and FGF inhibitory regulator

    2. XM_039080313.2 → XP_038936241.1  protein shisa-like-1 isoform X1

      Related
      ENSRNOP00000102053.1, ENSRNOT00000170927.1
      Conserved Domains (1) summary
      pfam13908
      Location:31 → 71
      Shisa; Wnt and FGF inhibitory regulator

    3. XM_039080315.2 → XP_038936243.1  protein shisa-like-1 isoform X2

      UniProtKB/TrEMBL
      A6HTB9, D3ZJY8
      Related
      ENSRNOP00000105114.1, ENSRNOT00000130367.1
      Conserved Domains (1) summary
      pfam13908
      Location:31 → 71
      Shisa; Wnt and FGF inhibitory regulator

    4. XM_017595274.3 → XP_017450763.1  protein shisa-like-1 isoform X1

      Related
      ENSRNOP00000112366.1, ENSRNOT00000161056.1
      Conserved Domains (1) summary
      pfam13908
      Location:31 → 71
      Shisa; Wnt and FGF inhibitory regulator

    5. XM_063264451.1 → XP_063120521.1  protein shisa-like-1 isoform X1

      UniProtKB/TrEMBL
      A6HTB9, D3ZJY8
    Nucleotide Protein Strain
    Heading Accession and Version

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