Pwwp4 PWWP domain containing 4 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Pwwp4provided by RGD
Official Full Name: PWWP domain containing 4provided by RGD
Primary source: RGD:1585131
See related: EnsemblRapid:ENSRNOG00000068777 AllianceGenome:RGD:1585131
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression: Biased expression in Testes (RPKM 14.5), Adrenal (RPKM 2.8) and 3 other tissues See more
Orthologs: human all
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Genomic context

Location:: Xq37

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	X	NC_086039.1 (156159344..156165457)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	X	NC_051356.1 (151008141..151014223)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	1	NC_005100.4 (146966354..146974136, complement)

Chromosome X - NC_086039.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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General protein information

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Preferred Names: PWWP domain-containing DNA repair factor 4

Names: PWWP domain-containing DNA repair factor 3B-like; PWWP domain-containing protein MUM1-like; PWWP domain-containing protein MUM1L1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001408900.1 → NP_001395829.1 PWWP domain-containing DNA repair factor 4

Status: VALIDATED

Source sequence(s)

JAXUCZ010000021

UniProtKB/TrEMBL

A0A8I5ZV76

Related

ENSRNOP00000083316.1, ENSRNOT00000109322.2

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086039.1 Reference GRCr8

Range

156159344..156165457

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_017590172.3 → XP_017445661.2 PWWP domain-containing DNA repair factor 4 isoform X1

UniProtKB/TrEMBL

A0A8I5ZV76

Conserved Domains (2) summary

cd06080
Location:407 → 486

MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...

PHA03377
Location:113 → 242

PHA03377; EBNA-3C; Provisional