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    Zc2hc1a zinc finger, C2HC-type containing 1A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 310244, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Zc2hc1aprovided by RGD
    Official Full Name
    zinc finger, C2HC-type containing 1Aprovided by RGD
    Primary source
    RGD:1311970
    See related
    EnsemblRapid:ENSRNOG00000022356 AllianceGenome:RGD:1311970
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Fam164a; RGD1311970
    Summary
    Predicted to enable metal ion binding activity. Orthologous to human ZC2HC1A (zinc finger C2HC-type containing 1A). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 142.3), Lung (RPKM 139.8) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Zc2hc1a in Genome Data Viewer
    Location:
    2q23
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (96194665..96231957, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (94287352..94324655, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (96482938..96520202, complement)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene uncharacterized LOC120100774 Neighboring gene interleukin 7 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene cAMP-dependent protein kinase inhibitor alpha

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Sequential Elution Interactome Analysis of the Mind Bomb 1 Ubiquitin Ligase Reveals a Novel Role in Dendritic Spine Outgrowth. Mertz J, et al. Mol Cell Proteomics, 2015 Jul. PMID 25931508, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger C2HC domain-containing protein 1A
    Names
    family with sequence similarity 164, member A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107661.1 → NP_001101131.1  zinc finger C2HC domain-containing protein 1A

      See identical proteins and their annotated locations for NP_001101131.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473961
      UniProtKB/TrEMBL
      B5DF95, F7F208
      Related
      ENSRNOP00000074099.2, ENSRNOT00000090866.3
      Conserved Domains (2) summary
      pfam09786
      Location:155 → 283
      CytochromB561_N; Cytochrome B561, N terminal
      pfam13913
      Location:15 → 39
      zf-C2HC_2; zinc-finger of a C2HC-type

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      96194665..96231957 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006232144.5 → XP_006232206.1  zinc finger C2HC domain-containing protein 1A isoform X1

      UniProtKB/TrEMBL
      A0A8I6GA23, F7F208
      Related
      ENSRNOP00000084225.1, ENSRNOT00000109624.2
      Conserved Domains (1) summary
      pfam13913
      Location:15 → 39
      zf-C2HC_2; zinc-finger of a C2HC-type
    Nucleotide Protein Strain
    Heading Accession and Version

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