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    Atxn7l2 ataxin 7-like 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 310781, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Atxn7l2provided by RGD
    Official Full Name
    ataxin 7-like 2provided by RGD
    Primary source
    RGD:1307047
    See related
    EnsemblRapid:ENSRNOG00000028749 AllianceGenome:RGD:1307047
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1307047
    Summary
    Orthologous to human ATXN7L2 (ataxin 7 like 2). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Thymus (RPKM 24.1), Adrenal (RPKM 21.1) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Atxn7l2 in Genome Data Viewer
    Location:
    2q34
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (198527066..198535899, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (195838920..195847339, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (210992904..211001287, complement)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene adhesion molecule with Ig like domain 1 Neighboring gene cytochrome b561 family, member D1 Neighboring gene synaptophysin-like 2 Neighboring gene uncharacterized LOC134485671

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    ataxin-7-like protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001398744.1 → NP_001385673.1  ataxin-7-like protein 2 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000002
      UniProtKB/TrEMBL
      A6HUY7, F7FKK4, Q4QQU0
      Conserved Domains (2) summary
      COG5602
      Location:183 → 386
      Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]
      pfam08313
      Location:261 → 321
      SCA7; zinc-binding domain

    2. NM_001398746.1 → NP_001385675.1  ataxin-7-like protein 2 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000002
      UniProtKB/TrEMBL
      Q4QQU0
      Related
      ENSRNOP00000030245.8, ENSRNOT00000037336.7

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      198527066..198535899 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063281920.1 → XP_063137990.1  ataxin-7-like protein 2 isoform X2

      UniProtKB/TrEMBL
      Q4QQU0

    2. XM_063281919.1 → XP_063137989.1  ataxin-7-like protein 2 isoform X1

      UniProtKB/TrEMBL
      A6HUY7, F7FKK4, Q4QQU0

    3. XM_063281921.1 → XP_063137991.1  ataxin-7-like protein 2 isoform X3

      UniProtKB/TrEMBL
      A0A8I6A798

    4. XM_063281922.1 → XP_063137992.1  ataxin-7-like protein 2 isoform X4

    Nucleotide Protein Strain
    Heading Accession and Version

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