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    C19h16orf87 similar to human chromosome 16 open reading frame 87 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 291925, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C19h16orf87provided by RGD
    Official Full Name
    similar to human chromosome 16 open reading frame 87provided by RGD
    Primary source
    RGD:1308706
    See related
    AllianceGenome:RGD:1308706
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1308706
    Summary
    Orthologous to human C16orf87 (chromosome 16 open reading frame 87). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Heart (RPKM 153.3), Kidney (RPKM 136.6) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See C19h16orf87 in Genome Data Viewer
    Location:
    19p11
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (37800187..37827091)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (21626390..21653869)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (22699808..22726712)

    Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene glutamic--pyruvic transaminase 2 Neighboring gene uncharacterized LOC102548349 Neighboring gene uncharacterized LOC120098665 Neighboring gene ribosomal protein S11, pseudogene 2 Neighboring gene uncharacterized LOC134483311 Neighboring gene myosin light chain kinase 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    UPF0547 protein C16orf87 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001134421.1 → NP_001127893.1  UPF0547 protein C16orf87 homolog

      See identical proteins and their annotated locations for NP_001127893.1

      Status: PROVISIONAL

      Source sequence(s)
      BC167107
      UniProtKB/TrEMBL
      A0A8I5ZLY2, B2RZC8, F7FK80
      Conserved Domains (1) summary
      pfam10571
      Location:14 → 38
      UPF0547; Uncharacterized protein family UPF0547

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086037.1 Reference GRCr8

      Range
      37800187..37827091
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017601209.3 → XP_017456698.1  UPF0547 protein C16orf87 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZLY2
    Nucleotide Protein Strain
    Heading Accession and Version

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