U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Sdr39u1 short chain dehydrogenase/reductase family 39U, member 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 361044, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Sdr39u1provided by RGD
    Official Full Name
    short chain dehydrogenase/reductase family 39U, member 1provided by RGD
    Primary source
    RGD:1309307
    See related
    EnsemblRapid:ENSRNOG00000020544 AllianceGenome:RGD:1309307
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1309307
    Summary
    Predicted to be located in mitochondrion. Orthologous to human SDR39U1 (short chain dehydrogenase/reductase family 39U member 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Liver (RPKM 138.3), Heart (RPKM 119.9) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Sdr39u1 in Genome Data Viewer
    Location:
    15p13
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 15 NC_086033.1 (33348057..33350892, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 15 NC_051350.1 (29378156..29380989, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 15 NC_005114.4 (34563786..34567465, complement)

    Chromosome 15 - NC_086033.1Genomic Context describing neighboring genes Neighboring gene NYN domain and retroviral integrase containing Neighboring gene cerebellin 3 precursor Neighboring gene KH and NYN domain containing Neighboring gene transfer RNA alanine (anticodon AGC) 50 Neighboring gene large ribosomal subunit protein eL21-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Proteomic characterization of the human sperm nucleus. de Mateo S, et al. Proteomics, 2011 Jul. PMID 21630459
    2. Quantitative high-confidence human mitochondrial proteome and its dynamics in cellular context. Morgenstern M, et al. Cell Metab, 2021 Dec 7. PMID 34800366, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    epimerase family protein SDR39U1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108378.2 → NP_001101848.1  epimerase family protein SDR39U1 isoform 2

      See identical proteins and their annotated locations for NP_001101848.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000015
      UniProtKB/TrEMBL
      A0A8I6GHZ4, A6KH64
      Related
      ENSRNOP00000063340.3, ENSRNOT00000064643.3
      Conserved Domains (2) summary
      cd05242
      Location:10 → 297
      SDR_a8; atypical (a) SDRs, subgroup 8
      TIGR01777
      Location:10 → 293
      yfcH; TIGR01777 family protein

    2. NM_001399584.1 → NP_001386513.1  epimerase family protein SDR39U1 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000015
      UniProtKB/TrEMBL
      A0A8I6GHZ4, A6KH63
      Related
      ENSRNOP00000089306.1, ENSRNOT00000100964.2

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086033.1 Reference GRCr8

      Range
      33348057..33350892 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006251994.5 → XP_006252056.1  epimerase family protein SDR39U1 isoform X1

      See identical proteins and their annotated locations for XP_006252056.1

      Conserved Domains (1) summary
      cl21454
      Location:32 → 259
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools