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    Slpi-ps1 secretory leukocyte peptidase inhibitor, pseudogene 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 408229, updated on 9-Dec-2024

    Summary

    Official Symbol
    Slpi-ps1provided by RGD
    Official Full Name
    secretory leukocyte peptidase inhibitor, pseudogene 1provided by RGD
    Primary source
    RGD:1303102
    See related
    AllianceGenome:RGD:1303102
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Slpil2
    Summary
    Predicted to enable serine-type endopeptidase inhibitor activity. Predicted to be involved in antibacterial humoral response and innate immune response. Predicted to be active in extracellular space. Orthologous to human SLPI (secretory leukocyte peptidase inhibitor). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Spleen (RPKM 549.1), Thymus (RPKM 213.5) and 2 other tissues See more
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    Genomic context

    See Slpi-ps1 in Genome Data Viewer
    Location:
    3q42
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (173438485..173440746, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (153019109..153021371, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (160736677..160738923, complement)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene seminal vesicle secretory protein 5 Neighboring gene antileukoproteinase-like Neighboring gene secretory leukocyte peptidase inhibitor, pseudogene 2 Neighboring gene secretory leukocyte peptidase inhibitor

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_242264.1 

      Range
      101..2362
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      173438485..173440746 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001008872.2: Suppressed sequence

      Description
      NM_001008872.2: This RefSeq was removed because there is insufficient evidence that this locus is transcribed.