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    Kctd4 potassium channel tetramerization domain containing 4 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 691835, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Kctd4provided by RGD
    Official Full Name
    potassium channel tetramerization domain containing 4provided by RGD
    Primary source
    RGD:1594637
    See related
    EnsemblRapid:ENSRNOG00000050996 AllianceGenome:RGD:1594637
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be involved in protein homooligomerization. Orthologous to human KCTD4 (potassium channel tetramerization domain containing 4). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Brain (RPKM 40.2), Thymus (RPKM 32.2) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Kctd4 in Genome Data Viewer
    Location:
    15q11
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 15 NC_086033.1 (57675024..57686816)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 15 NC_051350.1 (51263664..51278030)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 15 NC_005114.4 (58006288..58021166)

    Chromosome 15 - NC_086033.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102549099 Neighboring gene 40S ribosomal protein S29-like Neighboring gene general transcription factor IIF subunit 2 Neighboring gene small nucleolar RNA SNORA5 Neighboring gene uncharacterized LOC134482153

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in protein homooligomerization IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    BTB/POZ domain-containing protein KCTD4
    Names
    potassium channel tetramerisation domain containing 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109650.2 → NP_001103120.1  BTB/POZ domain-containing protein KCTD4

      See identical proteins and their annotated locations for NP_001103120.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000015
      UniProtKB/TrEMBL
      A6HTU4, D3ZXL9
      Related
      ENSRNOP00000065668.1, ENSRNOT00000075786.3
      Conserved Domains (1) summary
      cd18364
      Location:34 → 119
      BTB_POZ_KCTD4; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium channel tetramerization domain-containing protein 4 (KCTD4)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086033.1 Reference GRCr8

      Range
      57675024..57686816
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006252330.4 → XP_006252392.1  BTB/POZ domain-containing protein KCTD4 isoform X1

      UniProtKB/TrEMBL
      A6HTU4, D3ZXL9
      Related
      ENSRNOP00000099809.1, ENSRNOT00000157928.1
      Conserved Domains (1) summary
      cd18364
      Location:34 → 119
      BTB_POZ_KCTD4; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium channel tetramerization domain-containing protein 4 (KCTD4)
    Nucleotide Protein Strain
    Heading Accession and Version

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