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    1110059E24Rik RIKEN cDNA 1110059E24 gene [ Mus musculus (house mouse) ]

    Gene ID: 66206, updated on 27-Nov-2024

    Summary

    Official Symbol
    1110059E24Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1110059E24 geneprovided by MGI
    Primary source
    MGI:MGI:1913456
    See related
    Ensembl:ENSMUSG00000035171 AllianceGenome:MGI:1913456
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Orthologous to human C9orf85 (chromosome 9 open reading frame 85). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in CNS E11.5 (RPKM 13.8), bladder adult (RPKM 13.6) and 23 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See 1110059E24Rik in Genome Data Viewer
    Location:
    19 B; 19 15.54 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (21574677..21630155, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (21597313..21652791, complement)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene predicted gene 3443 Neighboring gene predicted gene, 38486 Neighboring gene STARR-seq mESC enhancer starr_45727 Neighboring gene STARR-positive B cell enhancer mm9_chr19:21727198-21727499 Neighboring gene abhydrolase domain containing 17B Neighboring gene STARR-positive B cell enhancer mm9_chr19:21788111-21788412 Neighboring gene predicted gene, 41818

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein C9orf85 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025423.2NP_079699.1  uncharacterized protein C9orf85 homolog

      See identical proteins and their annotated locations for NP_079699.1

      Status: PROVISIONAL

      Source sequence(s)
      AK004308
      Consensus CDS
      CCDS29699.1
      UniProtKB/Swiss-Prot
      Q9CQ90
      Related
      ENSMUSP00000048395.4, ENSMUST00000038830.10
      Conserved Domains (1) summary
      pfam10217
      Location:14102
      DUF2039; Uncharacterized conserved protein (DUF2039)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      21574677..21630155 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)