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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_042194.1 RefSeqGene
- Range
-
5001..482060
- Download
- GenBank, FASTA, Sequence Viewer (Graphics), LRG_1012
mRNA and Protein(s)
-
NM_001282470.3 → NP_001269399.1 glutamate receptor ionotropic, kainate 4 isoform 1 precursor
See identical proteins and their annotated locations for NP_001269399.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript. Both this variant and variant 2 encode the same isoform (1).
- Source sequence(s)
-
AK292726, AK314284, AP001929, AP002348, AW016926
- Consensus CDS
-
CCDS8433.1
- UniProtKB/Swiss-Prot
- A8K9L1, Q16099
- UniProtKB/TrEMBL
- A0A8D9PH79, B2RAP6
- Related
- ENSP00000404063.2, ENST00000438375.2
- Conserved Domains (2) summary
-
- cd13724
Location:415 → 785
- PBP2_iGluR_kainate_KA1; The ligand-binding domain of the kainate subtype KA1 of ionotropic glutamate receptors, a member of the type 2 periplasmic-binding fold protein superfamily
- cd06394
Location:24 → 402
- PBP1_iGluR_Kainate_KA1_2; N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor
-
NM_001282473.3 → NP_001269402.1 glutamate receptor ionotropic, kainate 4 isoform 2 precursor
See identical proteins and their annotated locations for NP_001269402.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) has an additional exon in the 5' UTR but lacks several 3' terminal exons, compared to variant 1. Its transcription extends past a splice site that is used in variant 1, resulting in a novel 3' coding region and 3' UTR. The resulting isoform (2) is shorter and has a distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AK314284, AP001929, AP002348, BC146652
- UniProtKB/TrEMBL
-
A6H8K8
- Related
-
ENST00000533291.5
- Conserved Domains (4) summary
-
- cd06394
Location:26 → 400
- PBP1_iGluR_Kainate_KA1_2; N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor
- pfam00060
Location:547 → 756
- Lig_chan; Ligand-gated ion channel
- pfam01094
Location:43 → 382
- ANF_receptor; Receptor family ligand binding region
- cl21456
Location:415 → 763
- Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily
-
NM_014619.5 → NP_055434.2 glutamate receptor ionotropic, kainate 4 isoform 1 precursor
See identical proteins and their annotated locations for NP_055434.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR and encodes the same isoform (1), compared to variant 1.
- Source sequence(s)
-
AK292726, AP001929, AW016926, DA246271, DB306924
- Consensus CDS
-
CCDS8433.1
- UniProtKB/Swiss-Prot
- A8K9L1, Q16099
- UniProtKB/TrEMBL
- A0A8D9PH79, B2RAP6
- Related
- ENSP00000435648.2, ENST00000527524.8
- Conserved Domains (2) summary
-
- cd13724
Location:415 → 785
- PBP2_iGluR_kainate_KA1; The ligand-binding domain of the kainate subtype KA1 of ionotropic glutamate receptors, a member of the type 2 periplasmic-binding fold protein superfamily
- cd06394
Location:24 → 402
- PBP1_iGluR_Kainate_KA1_2; N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000011.10 Reference GRCh38.p14 Primary Assembly
- Range
-
120511748..120988906
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017017621.3 → XP_016873110.1 glutamate receptor ionotropic, kainate 4 isoform X2
- UniProtKB/TrEMBL
-
B2RAP6
-
XM_017017622.3 → XP_016873111.1 glutamate receptor ionotropic, kainate 4 isoform X3
- UniProtKB/TrEMBL
-
B2RAP6
-
XM_011542784.3 → XP_011541086.1 glutamate receptor ionotropic, kainate 4 isoform X1
- UniProtKB/TrEMBL
- A0A8D9UJ88, B2RAP6
- Conserved Domains (2) summary
-
- cd13724
Location:361 → 731
- PBP2_iGluR_kainate_KA1; The ligand-binding domain of the kainate subtype KA1 of ionotropic glutamate receptors, a member of the type 2 periplasmic-binding fold protein superfamily
- cl10011
Location:24 → 348
- Periplasmic_Binding_Protein_type1; Type 1 periplasmic binding fold superfamily
-
XM_047426840.1 → XP_047282796.1 glutamate receptor ionotropic, kainate 4 isoform X4
-
XM_011542786.3 → XP_011541088.1 glutamate receptor ionotropic, kainate 4 isoform X5
- Conserved Domains (3) summary
-
- cd13724
Location:173 → 543
- PBP2_iGluR_kainate_KA1; The ligand-binding domain of the kainate subtype KA1 of ionotropic glutamate receptors, a member of the type 2 periplasmic-binding fold protein superfamily
- pfam00060
Location:305 → 574
- Lig_chan; Ligand-gated ion channel
- cl10011
Location:7 → 158
- Periplasmic_Binding_Protein_Type_1; Type 1 periplasmic binding fold superfamily
-
XM_011542787.3 → XP_011541089.1 glutamate receptor ionotropic, kainate 4 isoform X6
See identical proteins and their annotated locations for XP_011541089.1
- Conserved Domains (3) summary
-
- cd13724
Location:161 → 531
- PBP2_iGluR_kainate_KA1; The ligand-binding domain of the kainate subtype KA1 of ionotropic glutamate receptors, a member of the type 2 periplasmic-binding fold protein superfamily
- pfam00060
Location:293 → 562
- Lig_chan; Ligand-gated ion channel
- cl10011
Location:1 → 146
- Periplasmic_Binding_Protein_Type_1; Type 1 periplasmic binding fold superfamily
Alternate T2T-CHM13v2.0
Genomic
-
NC_060935.1 Alternate T2T-CHM13v2.0
- Range
-
120535497..121012594
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054368569.1 → XP_054224544.1 glutamate receptor ionotropic, kainate 4 isoform X2
- UniProtKB/TrEMBL
-
B2RAP6
-
XM_054368570.1 → XP_054224545.1 glutamate receptor ionotropic, kainate 4 isoform X3
- UniProtKB/TrEMBL
-
B2RAP6
-
XM_054368568.1 → XP_054224543.1 glutamate receptor ionotropic, kainate 4 isoform X1
- UniProtKB/TrEMBL
- A0A8D9UJ88, B2RAP6
-
XM_054368571.1 → XP_054224546.1 glutamate receptor ionotropic, kainate 4 isoform X4
-
XM_054368572.1 → XP_054224547.1 glutamate receptor ionotropic, kainate 4 isoform X5
-
XM_054368573.1 → XP_054224548.1 glutamate receptor ionotropic, kainate 4 isoform X6