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    CG42324 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 38430, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG42324provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0259224
    Locus tag
    Dmel_CG42324
    See related
    AllianceGenome:FB:FBgn0259224
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG14972; CG14973; Dmel\CG42324
    Old locus tag
    Dmel_CG14972; Dmel_CG14973
    Summary
    Orthologous to human BEGAIN (brain enriched guanylate kinase associated) and TJAP1 (tight junction associated protein 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG42324 in Genome Data Viewer
    Location:
    63E2-63E2; 3-8 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (3472447..3510895)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (3472447..3510895)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Cyclin J Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR45043 Neighboring gene Ecdysone-inducible gene E2 Neighboring gene Ecdysone-induced protein 63E

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Musashi expression in intestinal stem cells attenuates radiation-induced decline in intestinal permeability and survival in Drosophila. Sharma A, et al. Sci Rep, 2020 Nov 5. PMID 33154387, Free PMC Article
    2. Identification of SUMO-dependent chromatin-associated transcriptional repression components by a genome-wide RNAi screen. Stielow B, et al. Mol Cell, 2008 Mar 28. PMID 18374648
    3. Genome-wide studies of the multi-zinc finger Drosophila Suppressor of Hairy-wing protein in the ovary. Soshnev AA, et al. Nucleic Acids Res, 2012 Jul. PMID 22406832, Free PMC Article
    4. How do Wolbachia modify the Drosophila ovary? New evidences support the "titration-restitution" model for the mechanisms of Wolbachia-induced CI. He Z, et al. BMC Genomics, 2019 Jul 24. PMID 31340757, Free PMC Article
    5. A genetic toolkit for tagging intronic MiMIC containing genes. Nagarkar-Jaiswal S, et al. Elife, 2015 Jun 23. PMID 26102525, Free PMC Article

    See all (30) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    mobile_element

    • Loc: 3475135-3475515 mobile_element_type = transposon:jockey{}919

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG42324-PF
    CG42324-PG
    CG42324-PH
    CG42324-PI
    CG42324-PJ
    CG42324-PK

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      3472447..3510895
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_139562.3 → NP_647819.3  uncharacterized protein Dmel_CG42324, isoform K [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_647819.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VZP0
      Conserved Domains (1) summary
      pfam13863
      Location:49 → 156
      DUF4200; Domain of unknown function (DUF4200)

    2. NM_001274443.1 → NP_001261372.1  uncharacterized protein Dmel_CG42324, isoform J [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001261372.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9PBL9
      Conserved Domains (1) summary
      pfam13863
      Location:49 → 156
      DUF4200; Domain of unknown function (DUF4200)

    3. NM_139561.3 → NP_647818.3  uncharacterized protein Dmel_CG42324, isoform F [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_647818.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q059B2, Q9VZP1
      Conserved Domains (1) summary
      TIGR02168
      Location:46 → 201
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    4. NM_001274440.1 → NP_001261369.1  uncharacterized protein Dmel_CG42324, isoform G [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001261369.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9PEH1

    5. NM_001274442.1 → NP_001261371.1  uncharacterized protein Dmel_CG42324, isoform I [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001261371.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9PH72

    6. NM_001274441.2 → NP_001261370.1  uncharacterized protein Dmel_CG42324, isoform H [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001261370.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9PE63
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    M9PBL9 M9PBL9
    M9PE63 M9PE63
    M9PEH1 M9PEH1
    M9PH72 M9PH72
    Q9VZP0 Q9VZP0
    Q9VZP1 Q9VZP1

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