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    lncRNA:CR33942 long non-coding RNA:CR33942 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 3771992, updated on 9-Dec-2024

    Summary

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    Official Symbol
    lncRNA:CR33942provided by FlyBase
    Official Full Name
    long non-coding RNA:CR33942provided by FlyBase
    Primary source
    FLYBASE:FBgn0062961
    Locus tag
    Dmel_CR33942
    See related
    AllianceGenome:FB:FBgn0062961
    Gene type
    ncRNA
    RNA name
    lncRNA
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    BcDNA:RH09485; CR33942; Dmel\CR33942; lncRNA-CR33942; pncr016; pncr016:2R
    Summary
    Enables NF-kappaB binding activity and transcription coactivator activity. Involved in positive regulation of signal transduction; positive regulation of transcription by RNA polymerase II; and response to bacterium. Is active in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See lncRNA:CR33942 in Genome Data Viewer
    Location:
    55E9-55E9; 2-86 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (18711391..18711951)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (14598896..14599456)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene Salt-inducible kinase 3 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Vacuolar protein sorting 51 Neighboring gene Heparan sulfate 3-O sulfotransferase-A Neighboring gene mir-4982 stem loop Neighboring gene Lithium-inducible SLC6 transporter

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A putative amino acid transporter of the solute carrier 6 family is upregulated by lithium and is required for resistance to lithium toxicity in Drosophila. Kasuya J, et al. Neuroscience, 2009 Oct 20. PMID 19619614, Free PMC Article
    2. Translation and natural selection of micropeptides from long non-canonical RNAs. Patraquim P, et al. Nat Commun, 2022 Oct 31. PMID 36316320, Free PMC Article
    3. Interaction of lncRNA-CR33942 with Dif/Dorsal Facilitates Antimicrobial Peptide Transcriptions and Enhances Drosophila Toll Immune Responses. Zhou H, et al. J Immunol, 2022 Apr 15. PMID 35379744
    4. Identification of putative noncoding polyadenylated transcripts in Drosophila melanogaster. Tupy JL, et al. Proc Natl Acad Sci U S A, 2005 Apr 12. PMID 15809421, Free PMC Article
    5. The identification of regulatory ceRNA network involved in Drosophila Toll immune responses. Huang Y, et al. Dev Comp Immunol, 2024 Feb. PMID 38013113

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Interaction of lncRNA-CR33942 with Dif/Dorsal Facilitates Antimicrobial Peptide Transcriptions and Enhances Drosophila Toll Immune Responses.
      Title: Interaction of lncRNA-CR33942 with Dif/Dorsal Facilitates Antimicrobial Peptide Transcriptions and Enhances Drosophila Toll Immune Responses.
    Submit: New GeneRIF Correction

    General gene information

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    • alternate names: putative noncoding RNA 016:2R
    • lncRNA:CR33942-RA; Dmel\lncRNA:CR33942-RA; CR33942-RA; Dmel\CR33942-RA

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables NF-kappaB binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables transcription coactivator activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to Gram-negative bacterium IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in positive regulation of Toll signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of peptidoglycan recognition protein signaling pathway IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in response to Gram-positive bacterium IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      18711391..18711951
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. NR_002547.2 RNA Sequence

      Status: REVIEWED

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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