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    ytr yantar [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 47457, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ytrprovided by FlyBase
    Official Full Name
    yantarprovided by FlyBase
    Primary source
    FLYBASE:FBgn0021895
    Locus tag
    Dmel_CG18426
    See related
    AllianceGenome:FB:FBgn0021895
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    b(2)gcn; bgcn; CG18426; Dmel\CG18426; l(2)60A-F; l(2)k13108; l(2)k13214; Ytr; YTR
    Summary
    Involved in hemocyte differentiation. Part of precatalytic spliceosome. Is expressed in several structures, including female germline cell; hemocyte; larval imaginal tissue; and visceral mesoderm derivative. Orthologous to human SNRNP27 (small nuclear ribonucleoprotein U4/U6.U5 subunit 27). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See ytr in Genome Data Viewer
    Location:
    60A3-60A3; 2-105 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (23847161..23851480, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (19734684..19739003, complement)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene Synaptosomal-associated protein 29kDa Neighboring gene uncharacterized protein Neighboring gene antisense RNA:CR45928 Neighboring gene eukaryotic translation initiation factor 6 Neighboring gene glass bottom boat Neighboring gene benign gonial cell neoplasm Neighboring gene Partner of Y14 and Mago

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Increased expression of Drosophila tetraspanin, Tsp68C, suppresses the abnormal proliferation of ytr-deficient and Ras/Raf-activated hemocytes. Sinenko SA, et al. Oncogene, 2004 Dec 2. PMID 15480416
    2. Yantar, a conserved arginine-rich protein is involved in Drosophila hemocyte development. Sinenko SA, et al. Dev Biol, 2004 Sep 1. PMID 15302597
    3. The Drosophila melanogaster 60A chromosomal division is extremely dense with functional genes: their sequences, genomic organization, and expression. Lukacsovich T, et al. Genomics, 1999 Apr 1. PMID 10191082
    4. Competition within Introns: Splicing Wins over Polyadenylation via a General Mechanism. Tikhonov M, et al. Acta Naturae, 2013 Oct. PMID 24455183, Free PMC Article
    5. Genetic analysis of the bone morphogenetic protein-related gene, gbb, identifies multiple requirements during Drosophila development. Wharton KA, et al. Genetics, 1999 Jun. PMID 10353905, Free PMC Article

    See all (45) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables mRNA binding NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in hemocyte differentiation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in hemopoiesis NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    involved_in mRNA splicing, via spliceosome IC
    Inferred by Curator
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of precatalytic spliceosome HDA PubMed 

    General protein information

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    Preferred Names
    yantar
    Names
    CG18426-PA
    CG18426-PB
    ytr-PA
    ytr-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      23847161..23851480 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001299856.1 → NP_001286785.1  yantar, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001286785.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9W1I6
      Conserved Domains (1) summary
      pfam08648
      Location:124 → 190
      DUF1777; Protein of unknown function (DUF1777)

    2. NM_137995.3 → NP_611839.1  yantar, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_611839.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9W1I6
      Related
      FBpp0072143
      Conserved Domains (1) summary
      pfam08648
      Location:124 → 190
      DUF1777; Protein of unknown function (DUF1777)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8I7W6 Q8I7W6
    Q9W1I6 Q9W1I6

    Gene LinkOut

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