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    R10H10.3 CUB domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 177930, updated on 18-Sep-2024

    Summary

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    Official Symbol
    R10H10.3
    Official Full Name
    CUB domain-containing protein
    Primary source
    WormBase:WBGene00011222
    Locus tag
    CELE_R10H10.3
    See related
    AllianceGenome:WB:WBGene00011222
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See R10H10.3 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    6
    Sequence:
    Chromosome: IV; NC_003282.8 (10388505..10393294)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Ankyrin repeat and KH domain-containing protein mask-1;K Homology domain-containing protein Neighboring gene NFU1 iron-sulfur cluster scaffold homolog, mitochondrial Neighboring gene Spermatocyte protein spe-26 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene DUF3149 domain-containing protein Neighboring gene Guanine nucleotide-binding protein alpha-7 subunit Neighboring gene riboflavin kinase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Ca(2+)/Calmodulin-binding proteins from the C. elegans proteome. Shen X, et al. Cell Calcium, 2008 May. PMID 17854888
    2. Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans. Artan M, et al. J Biol Chem, 2022 Sep. PMID 35933017, Free PMC Article
    3. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
    4. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    CUB domain-containing protein
    NP_501918.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      10388505..10393294
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_069517.5 → NP_501918.1  CUB domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_501918.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q21916
      Conserved Domains (2) summary
      cd00041
      Location:50 → 153
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cd01450
      Location:163 → 328
      vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    Nucleotide Protein
    Heading Accession and Version

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