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    txt-9 UPF0057 membrane protein C04G6.5 [ Caenorhabditis elegans ]

    Gene ID: 173877, updated on 9-Dec-2024

    Summary

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    Official Symbol
    txt-9
    Official Full Name
    UPF0057 membrane protein C04G6.5
    Primary source
    WormBase:WBGene00015455
    Locus tag
    CELE_C04G6.5
    See related
    AllianceGenome:WB:WBGene00015455
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Involved in innate immune response. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See txt-9 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    2
    Sequence:
    Chromosome: II; NC_003280.10 (5085785..5086123)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene DiSHevelled related Neighboring gene Protein TIC Neighboring gene Phospholipase Neighboring gene ncRNA Neighboring gene DUF281 domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A conserved role for a GATA transcription factor in regulating epithelial innate immune responses. Shapira M, et al. Proc Natl Acad Sci U S A, 2006 Sep 19. PMID 16968778, Free PMC Article
    2. Screening for cold tolerance genes in C. elegans, whose expressions are affected by anticancer drugs camptothecin and leptomycin B. Okahata M, et al. Sci Rep, 2024 Mar 5. PMID 38443452, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in innate immune response HEP PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    UPF0057 membrane protein C04G6.5
    NP_494940.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      5085785..5086123
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_062539.5 → NP_494940.1  UPF0057 membrane protein C04G6.5 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_494940.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q17638
      Conserved Domains (1) summary
      pfam01679
      Location:8 → 56
      Pmp3; Proteolipid membrane potential modulator
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q17638.1

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