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    Y79H2A.3 C2H2-type domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 176638, updated on 18-Sep-2024

    Summary

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    Official Symbol
    Y79H2A.3
    Official Full Name
    C2H2-type domain-containing protein
    Primary source
    WormBase:WBGene00013580
    Locus tag
    CELE_Y79H2A.3
    See related
    AllianceGenome:WB:WBGene00013580
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See Y79H2A.3 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    28
    Sequence:
    Chromosome: III; NC_003281.10 (12031516..12052306, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Serpentine Receptor, class BC (Class B-like) Neighboring gene MARVEL domain-containing protein Neighboring gene RRM domain-containing protein Neighboring gene Actin-related protein 2/3 complex subunit Neighboring gene Serine/threonine-protein kinase zyg-8;non-specific serine/threonine protein kinase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SH3 interactome conserves general function over specific form. Xin X, et al. Mol Syst Biol, 2013. PMID 23549480, Free PMC Article
    2. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    C2H2-type domain-containing protein
    NP_001022955.2
    • Partially confirmed by transcript evidence
    NP_001022956.2
    • Partially confirmed by transcript evidence
    NP_001255155.1
    • Confirmed by transcript evidence
    NP_001255156.1
    • Confirmed by transcript evidence
    NP_001255157.1
    • Confirmed by transcript evidence
    NP_001255158.1
    • Partially confirmed by transcript evidence
    NP_001255159.1
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      12031516..12052306 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001268227.4 → NP_001255156.1  C2H2-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001255156.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H8ESF9
      Conserved Domains (1) summary
      pfam08597
      Location:873 → 960
      eIF3_subunit; Translation initiation factor eIF3 subunit

    2. NM_001027784.5 → NP_001022955.2  C2H2-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001022955.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9U1R8
      Conserved Domains (1) summary
      PTZ00121
      Location:812 → 993
      PTZ00121; MAEBL; Provisional

    3. NM_001268226.3 → NP_001255155.1  C2H2-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001255155.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H8ESG0
      Conserved Domains (1) summary
      pfam08597
      Location:873 → 960
      eIF3_subunit; Translation initiation factor eIF3 subunit

    4. NM_001268228.3 → NP_001255157.1  C2H2-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001255157.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H8ESF7
      Conserved Domains (2) summary
      pfam08597
      Location:238 → 325
      eIF3_subunit; Translation initiation factor eIF3 subunit
      pfam10187
      Location:223 → 303
      Nefa_Nip30_N; N-terminal domain of NEFA-interacting nuclear protein NIP30

    5. NM_001268229.3 → NP_001255158.1  C2H2-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001255158.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H8ESF8
      Conserved Domains (1) summary
      pfam08597
      Location:880 → 967
      eIF3_subunit; Translation initiation factor eIF3 subunit

    6. NM_001268230.2 → NP_001255159.1  C2H2-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001255159.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H8ESF6
      Conserved Domains (1) summary
      pfam08597
      Location:873 → 960
      eIF3_subunit; Translation initiation factor eIF3 subunit

    7. NM_001027785.5 → NP_001022956.2  C2H2-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001022956.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q7K705
      Conserved Domains (1) summary
      PTZ00121
      Location:866 → 993
      PTZ00121; MAEBL; Provisional
    Nucleotide Protein
    Heading Accession and Version

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