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    F42C5.5 Protein-tyrosine phosphatase catalytic domain-containing protein;Tyrosine-protein phosphatase domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 185664, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F42C5.5
    Official Full Name
    Protein-tyrosine phosphatase catalytic domain-containing protein;Tyrosine-protein phosphatase domain-containing protein
    Primary source
    WormBase:WBGene00018347
    Locus tag
    CELE_F42C5.5
    See related
    AllianceGenome:WB:WBGene00018347
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in protein dephosphorylation. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F42C5.5 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    5
    Sequence:
    Chromosome: IV; NC_003282.8 (7292534..7294221, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Protein containing ALS2cr12 (ALS2CR12) signature Neighboring gene ncRNA Neighboring gene RING-type domain-containing protein Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein Neighboring gene Transmembrane protein Neighboring gene Ground-like domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables protein tyrosine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Protein-tyrosine phosphatase catalytic domain-containing protein;Tyrosine-protein phosphatase domain-containing protein
    NP_001293831.1
    • Partially confirmed by transcript evidence
    NP_001368425.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      7292534..7294221 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001306902.3 → NP_001293831.1  Tyrosine-protein phosphatase domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001293831.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      V6CKP5
      Conserved Domains (1) summary
      smart00194
      Location:36 → 295
      PTPc; Protein tyrosine phosphatase, catalytic domain

    2. NM_001380317.1 → NP_001368425.1  Protein-tyrosine phosphatase catalytic domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      V6CM09
      Conserved Domains (1) summary
      smart00194
      Location:1 → 181
      PTPc; Protein tyrosine phosphatase, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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