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    K09E9.3 Transcription initiation factor TFIID subunit 5 [ Caenorhabditis elegans ]

    Gene ID: 181651, updated on 18-Sep-2024

    Summary

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    Official Symbol
    K09E9.3
    Official Full Name
    Transcription initiation factor TFIID subunit 5
    Primary source
    WormBase:WBGene00010726
    Locus tag
    CELE_K09E9.3
    See related
    AllianceGenome:WB:WBGene00010726
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See K09E9.3 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    5
    Sequence:
    Chromosome: X; NC_003284.9 (15611766..15613795, complement)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Ras-related protein Rab-14 Neighboring gene Protein nipi-3 Neighboring gene Endoplasmic reticulum-Golgi intermediate compartment protein 3 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SIN-3 acts in distinct complexes to regulate the germline transcriptional program in Caenorhabditis elegans. Robert VJ, et al. Development, 2023 Nov 1. PMID 37818613, Free PMC Article
    2. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    Transcription initiation factor TFIID subunit 5
    NP_001362108.1
    • Confirmed by transcript evidence
    NP_001362109.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      15611766..15613795 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001375183.1 → NP_001362108.1  Transcription initiation factor TFIID subunit 5 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5E4M2I1
      Conserved Domains (1) summary
      TIGR04211
      Location:307 → 412
      SH3_and_anchor; SH3 domain protein

    2. NM_001375184.3 → NP_001362109.1  Transcription initiation factor TFIID subunit 5 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5E4LZ74
      Conserved Domains (1) summary
      TIGR04211
      Location:310 → 415
      SH3_and_anchor; SH3 domain protein
    Nucleotide Protein
    Heading Accession and Version

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