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    Fubp1 far upstream element binding protein 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 654496, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Fubp1provided by RGD
    Official Full Name
    far upstream element binding protein 1provided by RGD
    Primary source
    RGD:1591892
    See related
    EnsemblRapid:ENSRNOG00000043370 AllianceGenome:RGD:1591892
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and mRNA binding activity. Involved in cellular response to lipopolysaccharide; positive regulation of Schwann cell migration; and response to nutrient levels. Predicted to be located in nucleoplasm. Predicted to be active in cytoplasm; nucleus; and synapse. Biomarker of sciatic neuropathy and traumatic brain injury. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Orthologous to human FUBP1 (far upstream element binding protein 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Thymus (RPKM 308.1), Spleen (RPKM 233.3) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Fubp1 in Genome Data Viewer
    Location:
    2q45
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (243819529..243846544)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (241159481..241186591)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (257425676..257452745)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S10 pseudogene Neighboring gene GIPC PDZ domain containing family, member 2 Neighboring gene DnaJ heat shock protein family (Hsp40) member B4 Neighboring gene transmembrane protein 256, pseudogene 2 Neighboring gene nexilin (F actin binding protein) Neighboring gene mitoguardin 1 Neighboring gene uncharacterized LOC120100974

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Upregulation of far upstream element-binding protein 1 (FUBP1) promotes tumor proliferation and unfavorable prognosis in tongue squamous cell carcinoma. Chen Y, et al. Int J Biol Markers, 2020 Jun. PMID 32339054
    2. Far upstream element-binding protein 1(FUBP1) expression differs between human colorectal cancer and non-cancerous tissue. Jia MY, et al. Neoplasma, 2014. PMID 25030436
    3. Knockdown of FUSE binding protein 1 enhances the sensitivity of epithelial ovarian cancer cells to carboplatin. Zhang J, et al. Oncol Lett, 2017 Nov. PMID 29113212, Free PMC Article
    4. FBP1 promotes ovarian cancer development through the acceleration of cell cycle transition and metastasis. Xiong X, et al. Oncol Lett, 2018 Aug. PMID 30008853, Free PMC Article
    5. Overexpression of the far upstream element binding protein 1 in hepatocellular carcinoma is required for tumor growth. Rabenhorst U, et al. Hepatology, 2009 Oct. PMID 19637194, Free PMC Article

    See all (24) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in cellular response to lipopolysaccharide IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within hematopoietic stem cell proliferation ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in positive regulation of Schwann cell migration IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in positive regulation of gene expression ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within regulation of transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in response to nutrient levels IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within somatic stem cell division ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in synapse ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    far upstream element-binding protein 1
    Names
    FBP
    FUSE-binding protein 1
    far upstream element (FUSE) binding protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001037653.1 → NP_001032742.1  far upstream element-binding protein 1

      See identical proteins and their annotated locations for NP_001032742.1

      Status: PROVISIONAL

      Source sequence(s)
      BC107942
      UniProtKB/Swiss-Prot
      Q32PX7
      UniProtKB/TrEMBL
      A0A140TAJ3
      Conserved Domains (2) summary
      cd00105
      Location:97 → 159
      KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
      pfam09005
      Location:603 → 617
      DUF1897; Domain of unknown function (DUF1897)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      243819529..243846544
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039103100.2 → XP_038959028.1  far upstream element-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A140TAJ3
      Conserved Domains (5) summary
      pfam09005
      Location:628 → 642
      DUF1897; Domain of unknown function (DUF1897)
      cd22478
      Location:115 → 189
      KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22481
      Location:203 → 272
      KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22484
      Location:293 → 360
      KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22487
      Location:393 → 464
      KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

    2. XM_039103105.2 → XP_038959033.1  far upstream element-binding protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A140TAJ3
      Conserved Domains (5) summary
      pfam09005
      Location:628 → 642
      DUF1897; Domain of unknown function (DUF1897)
      cd22478
      Location:115 → 189
      KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22481
      Location:203 → 272
      KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22484
      Location:293 → 360
      KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22487
      Location:393 → 464
      KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

    3. XM_039103102.2 → XP_038959030.1  far upstream element-binding protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A140TAJ3
      Conserved Domains (5) summary
      pfam09005
      Location:625 → 639
      DUF1897; Domain of unknown function (DUF1897)
      cd22478
      Location:115 → 189
      KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22481
      Location:203 → 272
      KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22484
      Location:293 → 360
      KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22487
      Location:393 → 464
      KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

    4. XM_039103101.2 → XP_038959029.1  far upstream element-binding protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A140TAJ3
      Conserved Domains (5) summary
      pfam09005
      Location:627 → 641
      DUF1897; Domain of unknown function (DUF1897)
      cd22478
      Location:114 → 188
      KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22481
      Location:202 → 271
      KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22484
      Location:292 → 359
      KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22487
      Location:392 → 463
      KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

    5. XM_039103103.2 → XP_038959031.1  far upstream element-binding protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A140TAJ3
      Conserved Domains (5) summary
      pfam09005
      Location:624 → 638
      DUF1897; Domain of unknown function (DUF1897)
      cd22478
      Location:114 → 188
      KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22481
      Location:202 → 271
      KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22484
      Location:292 → 359
      KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22487
      Location:392 → 463
      KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

    6. XM_039103106.2 → XP_038959034.1  far upstream element-binding protein 1 isoform X6

      UniProtKB/TrEMBL
      A0A140TAJ3
      Conserved Domains (5) summary
      pfam09005
      Location:607 → 621
      DUF1897; Domain of unknown function (DUF1897)
      cd22478
      Location:94 → 168
      KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22481
      Location:182 → 251
      KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22484
      Location:272 → 339
      KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22487
      Location:372 → 443
      KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

    7. XM_039103108.2 → XP_038959036.1  far upstream element-binding protein 1 isoform X10

      UniProtKB/TrEMBL
      A0A140TAJ3
      Conserved Domains (5) summary
      pfam09005
      Location:604 → 618
      DUF1897; Domain of unknown function (DUF1897)
      cd22478
      Location:94 → 168
      KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22481
      Location:182 → 251
      KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22484
      Location:272 → 339
      KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22487
      Location:372 → 443
      KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

    8. XM_039103107.2 → XP_038959035.1  far upstream element-binding protein 1 isoform X7

      UniProtKB/TrEMBL
      A0A140TAJ3, A0A8I5YBV8
      Related
      ENSRNOP00000077531.1, ENSRNOT00000094623.2
      Conserved Domains (5) summary
      pfam09005
      Location:606 → 620
      DUF1897; Domain of unknown function (DUF1897)
      cd22478
      Location:93 → 167
      KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22481
      Location:181 → 250
      KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22484
      Location:271 → 338
      KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22487
      Location:371 → 442
      KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

    9. XM_063282511.1 → XP_063138581.1  far upstream element-binding protein 1 isoform X14

      UniProtKB/TrEMBL
      A0A140TAJ3
      Related
      ENSRNOP00000061544.5, ENSRNOT00000066199.5

    10. XM_039103109.2 → XP_038959037.1  far upstream element-binding protein 1 isoform X11

      UniProtKB/TrEMBL
      A0A140TAJ3

    11. XM_063282512.1 → XP_063138582.1  far upstream element-binding protein 1 isoform X17

      UniProtKB/TrEMBL
      A0A140TAJ3

    12. XM_006233507.5 → XP_006233569.1  far upstream element-binding protein 1 isoform X8

      UniProtKB/TrEMBL
      A0A140TAJ3
      Conserved Domains (2) summary
      cd00105
      Location:119 → 181
      KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
      pfam09005
      Location:628 → 642
      DUF1897; Domain of unknown function (DUF1897)

    13. XM_006233511.5 → XP_006233573.1  far upstream element-binding protein 1 isoform X15

      UniProtKB/TrEMBL
      A0A140TAJ3
      Conserved Domains (2) summary
      cd00105
      Location:119 → 181
      KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
      pfam09005
      Location:628 → 642
      DUF1897; Domain of unknown function (DUF1897)

    14. XM_063282510.1 → XP_063138580.1  far upstream element-binding protein 1 isoform X12

      UniProtKB/TrEMBL
      A0A140TAJ3

    15. XM_006233512.5 → XP_006233574.1  far upstream element-binding protein 1 isoform X18

      UniProtKB/TrEMBL
      A0A140TAJ3
      Conserved Domains (2) summary
      cd00105
      Location:119 → 181
      KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
      pfam09005
      Location:625 → 639
      DUF1897; Domain of unknown function (DUF1897)

    16. XM_063282508.1 → XP_063138578.1  far upstream element-binding protein 1 isoform X9

      UniProtKB/TrEMBL
      A0A140TAJ3

    17. XM_039103111.2 → XP_038959039.1  far upstream element-binding protein 1 isoform X16

      UniProtKB/TrEMBL
      A0A140TAJ3
      Conserved Domains (5) summary
      pfam09005
      Location:627 → 641
      DUF1897; Domain of unknown function (DUF1897)
      cd22478
      Location:114 → 188
      KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22481
      Location:202 → 271
      KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22484
      Location:292 → 359
      KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22487
      Location:392 → 463
      KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

    18. XM_039103110.2 → XP_038959038.1  far upstream element-binding protein 1 isoform X13

      UniProtKB/TrEMBL
      A0A140TAJ3
      Conserved Domains (5) summary
      pfam09005
      Location:624 → 638
      DUF1897; Domain of unknown function (DUF1897)
      cd22478
      Location:114 → 188
      KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22481
      Location:202 → 271
      KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22484
      Location:292 → 359
      KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22487
      Location:392 → 463
      KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

    19. XM_039103113.2 → XP_038959041.1  far upstream element-binding protein 1 isoform X19

      UniProtKB/TrEMBL
      A0A140TAJ3
      Related
      ENSRNOP00000099811.1, ENSRNOT00000157036.1
      Conserved Domains (5) summary
      pfam09005
      Location:624 → 638
      DUF1897; Domain of unknown function (DUF1897)
      cd22478
      Location:114 → 188
      KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22481
      Location:202 → 271
      KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22484
      Location:292 → 359
      KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22487
      Location:392 → 463
      KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

    20. XM_008761555.4 → XP_008759777.1  far upstream element-binding protein 1 isoform X20

      UniProtKB/TrEMBL
      A0A140TAJ3
      Conserved Domains (2) summary
      pfam09005
      Location:607 → 621
      DUF1897; Domain of unknown function (DUF1897)
      cl00098
      Location:94 → 168
      KH-I; K homology (KH) RNA-binding domain, type I

    21. XM_063282515.1 → XP_063138585.1  far upstream element-binding protein 1 isoform X24

      UniProtKB/TrEMBL
      A0A140TAJ3
      Related
      ENSRNOP00000111951.1, ENSRNOT00000135698.1

    22. XM_006233513.5 → XP_006233575.1  far upstream element-binding protein 1 isoform X22

      UniProtKB/TrEMBL
      A0A140TAJ3
      Related
      ENSRNOP00000103007.1, ENSRNOT00000132758.1
      Conserved Domains (2) summary
      pfam09005
      Location:604 → 618
      DUF1897; Domain of unknown function (DUF1897)
      cl00098
      Location:94 → 168
      KH-I; K homology (KH) RNA-binding domain, type I

    23. XM_063282517.1 → XP_063138587.1  far upstream element-binding protein 1 isoform X26

      UniProtKB/TrEMBL
      A0A140TAJ3

    24. XM_008761556.4 → XP_008759778.1  far upstream element-binding protein 1 isoform X21

      UniProtKB/TrEMBL
      A0A140TAJ3
      Conserved Domains (2) summary
      pfam09005
      Location:606 → 620
      DUF1897; Domain of unknown function (DUF1897)
      cl00098
      Location:93 → 167
      KH-I; K homology (KH) RNA-binding domain, type I

    25. XM_063282516.1 → XP_063138586.1  far upstream element-binding protein 1 isoform X25

      UniProtKB/TrEMBL
      A0A140TAJ3
      Related
      ENSRNOP00000095243.2, ENSRNOT00000110491.2

    26. XM_063282514.1 → XP_063138584.1  far upstream element-binding protein 1 isoform X23

      UniProtKB/TrEMBL
      A0A140TAJ3

    RNA

    1. XR_005500367.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q32PX7.1 GenPept UniProtKB/Swiss-Prot:Q32PX7

    Gene LinkOut

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