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    prrc2b proline-rich coiled-coil 2B [ Danio rerio (zebrafish) ]

    Gene ID: 561451, updated on 9-Dec-2024

    Summary

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    Official Symbol
    prrc2bprovided by ZNC
    Official Full Name
    proline-rich coiled-coil 2Bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-110203-2
    See related
    Ensembl:ENSDARG00000079639 AllianceGenome:ZFIN:ZDB-GENE-110203-2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable DNA binding activity and DNA-binding transcription factor activity. Predicted to act upstream of or within regulation of DNA-templated transcription. Orthologous to human PRRC2B (proline rich coiled-coil 2B). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See prrc2b in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    34
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (72016655..72062289, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (71232133..71277797, complement)

    Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene inactive phospholipid phosphatase 7 Neighboring gene uncharacterized LOC137495664 Neighboring gene ATP-dependent RNA helicase DQX1-like Neighboring gene DEAQ box RNA-dependent ATPase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    protein PRRC2B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007116.7 Reference GRCz11 Primary Assembly

      Range
      72016655..72062289 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068221579.1 → XP_068077680.1  protein PRRC2B isoform X3

    2. XM_068221578.1 → XP_068077679.1  protein PRRC2B isoform X2

    3. XM_068221580.1 → XP_068077681.1  protein PRRC2B isoform X5

    4. XM_005172042.5 → XP_005172099.1  protein PRRC2B isoform X1

      UniProtKB/TrEMBL
      A0A8M2BJD6
      Conserved Domains (1) summary
      pfam07001
      Location:1 → 186
      BAT2_N; BAT2 N-terminus

    5. XM_005172046.5 → XP_005172103.1  protein PRRC2B isoform X4

      UniProtKB/TrEMBL
      A0A8M2BJB5
      Related
      ENSDARP00000098351.3, ENSDART00000112955.4
      Conserved Domains (1) summary
      pfam07001
      Location:1 → 186
      BAT2_N; BAT2 N-terminus
    Nucleotide Protein Strain
    Heading Accession and Version

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