taf8 TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: taf8provided by ZNC
Official Full Name: TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factorprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-1013
See related: Ensembl:ENSDARG00000026806 AllianceGenome:ZFIN:ZDB-GENE-040426-1013
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: tbnl; zgc:56401; zgc:77837
Summary: Predicted to enable protein heterodimerization activity. Predicted to be involved in transcription initiation at RNA polymerase II promoter. Predicted to act upstream of or within cell differentiation. Predicted to be located in cytoplasm and nucleus. Predicted to be part of transcription factor TFIID complex. Orthologous to human TAF8 (TATA-box binding protein associated factor 8). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 23

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	23	NC_007134.7 (32392461..32401225)
105	previous assembly	GRCz10 (GCF_000002035.5)	23	NC_007134.6 (32465919..32474461)

Chromosome 23 - NC_007134.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables protein heterodimerization activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within cell differentiation	IEA Inferred from Electronic Annotation more info
involved_in transcription initiation at RNA polymerase II promoter	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of transcription factor TFIID complex	IBA Inferred from Biological aspect of Ancestor more info
part_of transcription factor TFIID complex	IEA Inferred from Electronic Annotation more info
part_of transcription factor TFIID complex	ISS Inferred from Sequence or Structural Similarity more info

General protein information

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Preferred Names: transcription initiation factor TFIID subunit 8

Names: TBP-associated factor 8

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_200286.1 → NP_956580.1 transcription initiation factor TFIID subunit 8

See identical proteins and their annotated locations for NP_956580.1

Status: PROVISIONAL

Source sequence(s)

BC049422

UniProtKB/Swiss-Prot

Q6P0T2

Related

ENSDARP00000130755.2, ENSDART00000171715.2

Conserved Domains (2) summary

cd08049
Location:146 → 199

TAF8; TATA Binding Protein (TBP) Associated Factor 8

pfam07524
Location:32 → 108

Bromo_TP; Bromodomain associated