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    si:ch73-15b2.5 si:ch73-15b2.5 [ Danio rerio (zebrafish) ]

    Gene ID: 558551, updated on 9-Dec-2024

    Summary

    Official Symbol
    si:ch73-15b2.5provided by ZNC
    Official Full Name
    si:ch73-15b2.5provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-5406
    See related
    Ensembl:ENSDARG00000079467 AllianceGenome:ZFIN:ZDB-GENE-030131-5406
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fd16d01; wu:fd16d01; wu:fi75h08
    Summary
    Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in regulation of actin cytoskeleton organization. Predicted to be active in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
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    Genomic context

    See si:ch73-15b2.5 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (40563879..40572550)
    105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (40566321..40575025)

    Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101884206 Neighboring gene DNA-damage inducible protein 2 Neighboring gene translocase of outer mitochondrial membrane 6 homolog (yeast) Neighboring gene ubiquinol-cytochrome c reductase complex assembly factor 2 Neighboring gene translocator protein

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables guanyl-nucleotide exchange factor activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in regulation of actin cytoskeleton organization IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    rho guanine nucleotide exchange factor 19

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007117.7 Reference GRCz11 Primary Assembly

      Range
      40563879..40572550
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_681781.6XP_686873.2  rho guanine nucleotide exchange factor 19

      UniProtKB/TrEMBL
      A0A8N7UQT0, X1WCT2
      Related
      ENSDARP00000128029.1, ENSDART00000154766.2
      Conserved Domains (2) summary
      pfam00621
      Location:210388
      RhoGEF; RhoGEF domain
      cl17171
      Location:412532
      PH-like; Pleckstrin homology-like domain

    RNA

    1. XR_011016048.1 RNA Sequence

    2. XR_011016047.1 RNA Sequence