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    virma vir like m6A methyltransferase associated [ Danio rerio (zebrafish) ]

    Gene ID: 560260, updated on 9-Dec-2024

    Summary

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    Official Symbol
    virmaprovided by ZNC
    Official Full Name
    vir like m6A methyltransferase associatedprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-100922-238
    See related
    Ensembl:ENSDARG00000075824 AllianceGenome:ZFIN:ZDB-GENE-100922-238
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fa20f07; wu:fa20f07; si:ch211-79l20.4
    Summary
    Predicted to be involved in mRNA modification. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of RNA N6-methyladenosine methyltransferase complex. Orthologous to human VIRMA (vir like m6A methyltransferase associated). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See virma in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (26680489..26717597)
    105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (26807050..26844155)

    Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene erythrocyte membrane protein band 4.1 like 4B Neighboring gene uncharacterized LOC137487907 Neighboring gene epithelial splicing regulatory protein 1 Neighboring gene ring finger protein 41, like Neighboring gene RAD54 homolog B Neighboring gene fibrinogen silencer binding protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Many genes in fish have species-specific asymmetric rates of molecular evolution. Steinke D, et al. BMC Genomics, 2006 Feb 8. PMID 16466575, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    protein virilizer homolog; vir like m6A methyltransferase associated

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007127.7 Reference GRCz11 Primary Assembly

      Range
      26680489..26717597
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005158034.5 → XP_005158091.1  protein virilizer homolog isoform X1

      UniProtKB/TrEMBL
      A0A8M2B4B7
      Conserved Domains (1) summary
      pfam15912
      Location:5 → 254
      VIR_N; Virilizer, N-terminal

    2. XM_005158035.5 → XP_005158092.1  protein virilizer homolog isoform X2

      UniProtKB/TrEMBL
      A0A0R4IAI1, A0A8M2B4B0
      Related
      ENSDARP00000131427.1, ENSDART00000159064.3
      Conserved Domains (1) summary
      pfam15912
      Location:5 → 254
      VIR_N; Virilizer, N-terminal

    3. XM_683656.9 → XP_688748.4  protein virilizer homolog isoform X3

      UniProtKB/TrEMBL
      A0A8N7T781
      Conserved Domains (1) summary
      pfam15912
      Location:5 → 254
      VIR_N; Virilizer, N-terminal

    4. XM_068214141.1 → XP_068070242.1  protein virilizer homolog isoform X4

      Related
      ENSDARP00000115495.1, ENSDART00000142215.3
    Nucleotide Protein Strain
    Heading Accession and Version

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