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    ylpm1 YLP motif containing 1 [ Danio rerio (zebrafish) ]

    Gene ID: 561348, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ylpm1provided by ZNC
    Official Full Name
    YLP motif containing 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-2196
    See related
    Ensembl:ENSDARG00000043680 AllianceGenome:ZFIN:ZDB-GENE-030131-2196
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb99d08; wu:fb99d08; si:ch211-59d15.5
    Summary
    Predicted to be involved in regulation of telomere maintenance. Predicted to be active in nucleus. Orthologous to human YLPM1 (YLP motif containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See ylpm1 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (9172301..9199970, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (9184559..9212273, complement)

    Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137488615 Neighboring gene SAYSVFN motif domain containing 1 Neighboring gene bisphosphate nucleotidase 1 Neighboring gene uncharacterized LOC137488614 Neighboring gene fos-like antigen 2 like Neighboring gene potassium channel, subfamily K, member 5b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. An in silico mining for simple sequence repeats from expressed sequence tags of zebrafish, medaka, Fundulus, and Xiphophorus. Ju Z, et al. In Silico Biol, 2005. PMID 16268789
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in regulation of telomere maintenance IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    YLP motif-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007131.7 Reference GRCz11 Primary Assembly

      Range
      9172301..9199970 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003200679.6 → XP_003200727.2  YLP motif-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8M1RP34
      Conserved Domains (3) summary
      pfam08430
      Location:349 → 435
      Forkhead_N; Forkhead N-terminal region
      pfam08648
      Location:1376 → 1486
      DUF1777; Protein of unknown function (DUF1777)
      pfam13671
      Location:1523 → 1658
      AAA_33; AAA domain

    2. XM_005170154.5 → XP_005170211.2  YLP motif-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BHJ2, F6P6X1
      Related
      ENSDARP00000064139.4, ENSDART00000064140.5
      Conserved Domains (3) summary
      pfam08430
      Location:370 → 456
      Forkhead_N; Forkhead N-terminal region
      pfam08648
      Location:1397 → 1507
      DUF1777; Protein of unknown function (DUF1777)
      pfam13671
      Location:1544 → 1679
      AAA_33; AAA domain

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001044956.1: Suppressed sequence

      Description
      NM_001044956.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from human: YLPM1 (GeneID:56252).
    Nucleotide Protein Strain
    Heading Accession and Version

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