wu:fc30c06 wu:fc30c06 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: wu:fc30c06provided by ZNC
Official Full Name: wu:fc30c06provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-3190
See related: Ensembl:ENSDARG00000103865 AllianceGenome:ZFIN:ZDB-GENE-030131-3190
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fc30c06
Summary: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to several human genes including ZNF222 (zinc finger protein 222); ZNF627 (zinc finger protein 627); and ZNF670 (zinc finger protein 670). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

Location:: chromosome: 4

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	4	NC_007115.7 (73256874..73266953, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	4	NC_007115.6 (71603309..71612425, complement)

Chromosome 4 - NC_007115.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fc30c06.x1 (e-PCR)
- UniSTS:187929

fc30c06.x1 (e-PCR)
- UniSTS:187930

AI722683 (e-PCR)
- UniSTS:205995

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IBA Inferred from Biological aspect of Ancestor more info
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: uncharacterized protein LOC324469

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001327916.1 → NP_001314845.1 uncharacterized protein LOC324469

Status: VALIDATED

Source sequence(s)

CABZ01021432, CABZ01021433

UniProtKB/TrEMBL

A0A0R4ISU2, A0A8M1P8I0

Related

ENSDARP00000138031.1, ENSDART00000158194.3

Conserved Domains (3) summary

COG5048
Location:146 → 390

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:94 → 114

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam13465
Location:106 → 131

zf-H2C2_2; Zinc-finger double domain