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    • Showing Current items.

    zgc:174906 zgc:174906 [ Danio rerio (zebrafish) ]

    Gene ID: 571548, updated on 9-Dec-2024

    Summary

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    Official Symbol
    zgc:174906provided by ZNC
    Official Full Name
    zgc:174906provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-6125
    See related
    Ensembl:ENSDARG00000075314 AllianceGenome:ZFIN:ZDB-GENE-030131-6125
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fi35d01; wu:fi35d01
    Summary
    Predicted to act upstream of or within regulation of apoptotic process and signal transduction. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See zgc:174906 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (36443022..36449111, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (36344219..36350308, complement)

    Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103909707 Neighboring gene cysteine sulfinic acid decarboxylase Neighboring gene LIM domain and actin binding 1a Neighboring gene U4 spliceosomal RNA Neighboring gene SPRY domain containing 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RNA structural dynamics regulate early embryogenesis through controlling transcriptome fate and function. Shi B, et al. Genome Biol, 2020 May 18. PMID 32423473, Free PMC Article
    2. Transcriptome comparison reveals a genetic network regulating the lower temperature limit in fish. Hu P, et al. Sci Rep, 2016 Jun 30. PMID 27356472, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC571548

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001115057.1 → NP_001108529.1  uncharacterized protein LOC571548

      See identical proteins and their annotated locations for NP_001108529.1

      Status: PREDICTED

      Source sequence(s)
      BC159226
      UniProtKB/TrEMBL
      B0JZL2
      Related
      ENSDARP00000097990.1, ENSDART00000110478.3
      Conserved Domains (2) summary
      cd01670
      Location:140 → 212
      Death; Death Domain: a protein-protein interaction domain
      cd01671
      Location:11 → 80
      CARD; Caspase activation and recruitment domain: a protein-protein interaction domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007134.7 Reference GRCz11 Primary Assembly

      Range
      36443022..36449111 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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