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    rbm25a RNA binding motif protein 25a [ Danio rerio (zebrafish) ]

    Gene ID: 568088, updated on 9-Dec-2024

    Summary

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    Official Symbol
    rbm25aprovided by ZNC
    Official Full Name
    RNA binding motif protein 25aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-090312-142
    See related
    AllianceGenome:ZFIN:ZDB-GENE-090312-142
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch211-12d10.5
    Summary
    Predicted to enable mRNA binding activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome. Orthologous to human RBM25 (RNA binding motif protein 25). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See rbm25a in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (32997020..33022369, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (32866564..32891932, complement)

    Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103912024 Neighboring gene potassium voltage-gated channel, subfamily F, member 1b Neighboring gene arginase 2 Neighboring gene vesicle transport through interaction with t-SNAREs 1B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Transcriptomic analyses reveal novel genes with sexually dimorphic expression in the zebrafish gonad and brain. Sreenivasan R, et al. PLoS One, 2008 Mar 12. PMID 18335061, Free PMC Article
    2. Contrasted innate responses to two viruses in zebrafish: insights into the ancestral repertoire of vertebrate IFN-stimulated genes. Briolat V, et al. J Immunol, 2014 May 1. PMID 24683187
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    RNA-binding protein 25
    Names
    RNA binding motif protein 25-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007124.7 Reference GRCz11 Primary Assembly

      Range
      32997020..33022369 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005156958.5 → XP_005157015.1  RNA-binding protein 25

      UniProtKB/TrEMBL
      A0A8M2B3B1
      Conserved Domains (3) summary
      smart00311
      Location:725 → 798
      PWI; PWI, domain in splicing factors
      COG5281
      Location:383 → 528
      COG5281; Phage-related minor tail protein [Mobilome: prophages, transposons]
      cd12446
      Location:87 → 167
      RRM_RBM25; RNA recognition motif in eukaryotic RNA-binding protein 25 and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version

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