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    znf609b zinc finger protein 609b [ Danio rerio (zebrafish) ]

    Gene ID: 555219, updated on 9-Dec-2024

    Summary

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    Official Symbol
    znf609bprovided by ZNC
    Official Full Name
    zinc finger protein 609bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-5095
    See related
    Ensembl:ENSDARG00000104530 AllianceGenome:ZFIN:ZDB-GENE-030131-5095
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    znf609; fc26a02; fe47c12; dZ112P11.1; wu:fc26a02; wu:fe47c12; si:busm1-112p11.1
    Summary
    Orthologous to human ZNF609 (zinc finger protein 609). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See znf609b in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (53413445..53534790)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (53228596..53263746)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137496104 Neighboring gene thyroid hormone receptor interactor 4 Neighboring gene GRAM domain containing 2Aa Neighboring gene cholinergic receptor, nicotinic, alpha 7a (neuronal)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. A Toolbox for Efficient Proximity-Dependent Biotinylation in Zebrafish Embryos. Rosenthal SM, et al. Mol Cell Proteomics, 2021. PMID 34332124, Free PMC Article
    2. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC173512

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 609b
    Names
    zinc finger protein 609

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001030081.2 → NP_001025252.2  zinc finger protein 609b

      Status: VALIDATED

      Source sequence(s)
      BX649246, CR381650
      UniProtKB/TrEMBL
      Q6ZM08
      Related
      ENSDARP00000135486.1, ENSDART00000164643.3
      Conserved Domains (2) summary
      COG5189
      Location:499 → 522
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      cl27702
      Location:374 → 465
      COG3942; Surface antigen [Cell wall/membrane/envelope biogenesis]

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      53413445..53534790
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068222301.1 → XP_068078402.1  zinc finger protein 609b isoform X1

      UniProtKB/TrEMBL
      Q6ZM08

    2. XM_068222303.1 → XP_068078404.1  zinc finger protein 609b isoform X3

    3. XM_068222302.1 → XP_068078403.1  zinc finger protein 609b isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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