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    si:dkey-261j15.2 si:dkey-261j15.2 [ Danio rerio (zebrafish) ]

    Gene ID: 794828, updated on 14-Nov-2024

    Summary

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    Official Symbol
    si:dkey-261j15.2provided by ZNC
    Official Full Name
    si:dkey-261j15.2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-120215-69
    See related
    Ensembl:ENSDARG00000096411 AllianceGenome:ZFIN:ZDB-GENE-120215-69
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fc32g12; wu:fc32g12
    Orthologs
    all
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    Genomic context

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    See si:dkey-261j15.2 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (6669368..6673729, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (6512199..6516560, complement)

    Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene BCL11 transcription factor A b Neighboring gene zgc:113227 Neighboring gene coiled-coil domain containing 85A, like Neighboring gene si:ch211-85n16.3 Neighboring gene SEC23 homolog B, coat complex II component

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables phosphoribosylaminoimidazolesuccinocarboxamide synthase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in 'de novo' IMP biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC794828

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001326584.1 → NP_001313513.1  uncharacterized protein LOC794828

      Status: VALIDATED

      Source sequence(s)
      CR926129, EB926611, EH539665, EH563558
      UniProtKB/TrEMBL
      A0A8M1P2U9, I3IST1
      Related
      ENSDARP00000125975.1, ENSDART00000150995.2
      Conserved Domains (1) summary
      pfam13837
      Location:9 → 82
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007117.7 Reference GRCz11 Primary Assembly

      Range
      6669368..6673729 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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