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    ubn1 ubinuclein 1 [ Danio rerio (zebrafish) ]

    Gene ID: 566684, updated on 9-Dec-2024

    Summary

    Official Symbol
    ubn1provided by ZNC
    Official Full Name
    ubinuclein 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070928-28
    See related
    Ensembl:ENSDARG00000063169 AllianceGenome:ZFIN:ZDB-GENE-070928-28
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:171747
    Summary
    Orthologous to human UBN1 (ubinuclein 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See ubn1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (9270015..9277986, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (8585904..8593875, complement)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene si:dkeyp-57d7.4 Neighboring gene zgc:136472 Neighboring gene Unc4.1 homeobox (C. elegans) Neighboring gene uncharacterized LOC137494913

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001105118.1NP_001098588.1  ubinuclein-1

      See identical proteins and their annotated locations for NP_001098588.1

      Status: PROVISIONAL

      Source sequence(s)
      BC151958
      UniProtKB/TrEMBL
      A7MBX6
      Related
      ENSDARP00000098092.3, ENSDART00000114876.5
      Conserved Domains (2) summary
      pfam08729
      Location:141
      HUN; HPC2 and ubinuclein domain
      pfam14075
      Location:233310
      UBN_AB; Ubinuclein conserved middle domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      9270015..9277986 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394461.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      369829..377800 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)