U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    zgc:153738 zgc:153738 [ Danio rerio (zebrafish) ]

    Gene ID: 558115, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    zgc:153738provided by ZNC
    Official Full Name
    zgc:153738provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-061013-622
    See related
    Ensembl:ENSDARG00000069230 AllianceGenome:ZFIN:ZDB-GENE-061013-622
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable ATP binding activity and ATP hydrolysis activity. Predicted to be involved in anatomical structure morphogenesis. Orthologous to several human genes including IQCA1 (IQ motif containing with AAA domain 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See zgc:153738 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (18450052..18500189, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (18414343..18425079, complement)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene DNA methyltransferase 1 associated protein 1 Neighboring gene obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF a Neighboring gene ALK and LTK ligand 1 Neighboring gene uncharacterized LOC103911491 Neighboring gene MINDY lysine 48 deubiquitinase 4

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Systematic discovery of novel ciliary genes through functional genomics in the zebrafish. Choksi SP, et al. Development, 2014 Sep. PMID 25139857, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in anatomical structure morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein LOC558115
    Names
    IQ and AAA domain-containing protein-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001079968.3 → NP_001073437.3  uncharacterized protein LOC558115

      Status: VALIDATED

      Source sequence(s)
      AL844185
      UniProtKB/TrEMBL
      A0A8N7UYH5, A5PF14
      Related
      ENSDARP00000105398.2, ENSDART00000129535.4
      Conserved Domains (2) summary
      COG0464
      Location:557 → 769
      SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]
      pfam00004
      Location:559 → 692
      AAA; ATPase family associated with various cellular activities (AAA)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      18450052..18500189 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068222970.1 → XP_068079071.1  uncharacterized protein LOC558115 isoform X1

    2. XM_068222969.1 → XP_068079070.1  uncharacterized protein LOC558115 isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools