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    s100v1 S100 calcium binding protein V1 [ Danio rerio (zebrafish) ]

    Gene ID: 100144627, updated on 27-Dec-2024

    Summary

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    Official Symbol
    s100v1provided by ZNC
    Official Full Name
    S100 calcium binding protein V1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-080407-1
    See related
    Ensembl:ENSDARG00000070427 AllianceGenome:ZFIN:ZDB-GENE-080407-1
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Is expressed in gill; gut; head kidney; and spleen. Orthologous to several human genes including S100A13 (S100 calcium binding protein A13). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See s100v1 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (28754477..28760010)
    105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (28819826..28825385)

    Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene DC-STAMP domain containing 1 Neighboring gene uncharacterized LOC137487911 Neighboring gene DC-STAMP domain containing 2 Neighboring gene tripartite motif containing 33, like Neighboring gene zgc:171704

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Structural and functional diversification in the teleost S100 family of calcium-binding proteins. Kraemer AM, et al. BMC Evol Biol, 2008 Feb 14. PMID 18275604, Free PMC Article
    2. Transcriptomic responses of S100 family to bacterial and viral infection in zebrafish. Zhang C, et al. Fish Shellfish Immunol, 2019 Nov. PMID 31546038
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    S100 calcium binding protein V1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001366340.1 → NP_001353269.1  S100 calcium binding protein V1

      Status: VALIDATED

      Source sequence(s)
      CR388365
      Related
      ENSDARP00000094117.4, ENSDART00000103340.5
      Conserved Domains (1) summary
      cd05022
      Location:6 → 96
      S-100A13; S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which ...

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007127.7 Reference GRCz11 Primary Assembly

      Range
      28754477..28760010
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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