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    nipsnap3a nipsnap homolog 3A (C. elegans) [ Danio rerio (zebrafish) ]

    Gene ID: 393234, updated on 9-Dec-2024

    Summary

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    Official Symbol
    nipsnap3aprovided by ZNC
    Official Full Name
    nipsnap homolog 3A (C. elegans)provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-1037
    See related
    Ensembl:ENSDARG00000020387 AllianceGenome:ZFIN:ZDB-GENE-040426-1037
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    nipsnap3; zgc:56466
    Summary
    Predicted to be involved in mitophagy. Predicted to be active in mitochondrion. Is expressed in alar plate midbrain region; digestive system; intestinal bulb primordium; and optic tectum. Orthologous to several human genes including NIPSNAP3A (nipsnap homolog 3A). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See nipsnap3a in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (6520310..6526967, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (6213586..6220240, complement)

    Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 44 member 1b Neighboring gene ATP-binding cassette, sub-family A (ABC1), member 1B Neighboring gene uncharacterized LOC137487561 Neighboring gene probable pancreatic secretory proteinase inhibitor Neighboring gene tRNA-histidine guanylyltransferase 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Proteome dynamics in neutrophils of adult zebrafish upon chemically-induced inflammation. Singh SK, et al. Fish Shellfish Immunol, 2014 Sep. PMID 25014315
    2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC56466

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in mitophagy IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    protein NipSnap homolog 3A
    Names
    nipsnap homolog 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200264.3 → NP_956558.2  protein NipSnap homolog 3A

      Status: VALIDATED

      Source sequence(s)
      CT009487
      UniProtKB/TrEMBL
      A0A8M1PGX5, F1QWR0
      Related
      ENSDARP00000110906.1, ENSDART00000125058.3
      Conserved Domains (1) summary
      pfam07978
      Location:62 → 160
      NIPSNAP; NIPSNAP

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007125.7 Reference GRCz11 Primary Assembly

      Range
      6520310..6526967 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068213176.1 → XP_068069277.1  protein NipSnap homolog 3A isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

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