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    rbfa ribosome binding factor A [ Danio rerio (zebrafish) ]

    Gene ID: 100037330, updated on 9-Dec-2024

    Summary

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    Official Symbol
    rbfaprovided by ZNC
    Official Full Name
    ribosome binding factor Aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070410-83
    See related
    Ensembl:ENSDARG00000073705 AllianceGenome:ZFIN:ZDB-GENE-070410-83
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:162590
    Summary
    Predicted to act upstream of or within rRNA processing. Orthologous to human RBFA (ribosome binding factor A). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See rbfa in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (25361515..25368048, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (25449281..25453016, complement)

    Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene microRNA 30b Neighboring gene zinc finger and AT hook domain containing Neighboring gene ADNP homeobox 2a Neighboring gene par-6 family cell polarity regulator gamma a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    putative ribosome-binding factor A, mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001089485.2 → NP_001082954.2  putative ribosome-binding factor A, mitochondrial

      Status: VALIDATED

      Source sequence(s)
      CR391941
      UniProtKB/TrEMBL
      A4IGC4
      Related
      ENSDARP00000114038.1, ENSDART00000132445.2

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007127.7 Reference GRCz11 Primary Assembly

      Range
      25361515..25368048 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021466574.1 → XP_021322249.1  putative ribosome-binding factor A, mitochondrial isoform X1

      UniProtKB/TrEMBL
      A0A8M9PCU0, A4IGC4, F1QXS7
      Conserved Domains (1) summary
      pfam02033
      Location:104 → 208
      RBFA; Ribosome-binding factor A
    Nucleotide Protein Strain
    Heading Accession and Version

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