psmd5 proteasome 26S subunit, non-ATPase 5 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: psmd5provided by ZNC
Official Full Name: proteasome 26S subunit, non-ATPase 5provided by ZNC
Primary source: ZFIN:ZDB-GENE-050417-28
See related: Ensembl:ENSDARG00000059046 AllianceGenome:ZFIN:ZDB-GENE-050417-28
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: im:7137623; zgc:110116
Summary: Predicted to act upstream of or within proteasome assembly. Predicted to be part of proteasome complex. Orthologous to human PSMD5 (proteasome 26S subunit, non-ATPase 5). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 21

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	21	NC_007132.7 (5368128..5393125, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	21	NC_007132.6 (5203563..5228560, complement)

Chromosome 21 - NC_007132.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within proteasome assembly	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of proteasome complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: 26S proteasome non-ATPase regulatory subunit 5

Names: proteasome (prosome, macropain) 26S subunit, non-ATPase, 5; proteasome 26S non-ATPase subunit 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001017573.2 → NP_001017573.2 26S proteasome non-ATPase regulatory subunit 5

Status: VALIDATED

Source sequence(s)

BC076043, BC092738, EB971162

UniProtKB/TrEMBL

A0A8M1N5A3, F1QU35, Q6DHD2

Related

ENSDARP00000122309.1, ENSDART00000146061.3

Conserved Domains (1) summary

pfam10508
Location:2 → 505

Proteasom_PSMB; Proteasome non-ATPase 26S subunit