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    lrrc20 leucine rich repeat containing 20 [ Danio rerio (zebrafish) ]

    Gene ID: 492485, updated on 9-Dec-2024

    Summary

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    Official Symbol
    lrrc20provided by ZNC
    Official Full Name
    leucine rich repeat containing 20provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041114-49
    See related
    Ensembl:ENSDARG00000105018 AllianceGenome:ZFIN:ZDB-GENE-041114-49
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:103699
    Summary
    Orthologous to human LRRC20 (leucine rich repeat containing 20). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See lrrc20 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (48214603..48240131)
    105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (48304852..48330365)

    Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene phosphatase domain containing paladin 1a Neighboring gene neuropeptide FF receptor 1-like Neighboring gene nodal-related 2 Neighboring gene inorganic pyrophosphatase 1a Neighboring gene secretion associated, Ras related GTPase 1Aa

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. The evolutionary origin of nodal-related genes in teleosts. Fan X, et al. Dev Genes Evol, 2007 Dec. PMID 17992538
    2. A high-resolution mRNA expression time course of embryonic development in zebrafish. White RJ, et al. Elife, 2017 Nov 16. PMID 29144233, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    leucine-rich repeat-containing protein 20

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001007357.2 → NP_001007358.2  leucine-rich repeat-containing protein 20

      Status: VALIDATED

      Source sequence(s)
      CABZ01080691, FO704685
      UniProtKB/TrEMBL
      A0A0R4IPB8, A0A8M2BKA4, Q5U3D7
      Related
      ENSDARP00000150301.1, ENSDART00000187369.1

    2. NM_001430864.1 → NP_001417793.1  leucine-rich repeat-containing protein 20

      Status: VALIDATED

      Source sequence(s)
      CABZ01080691, FO704685
      UniProtKB/TrEMBL
      A0A0R4IPB8, A0A8M2BKA4, Q5U3D7

    3. NM_001430865.1 → NP_001417794.1  leucine-rich repeat-containing protein 20

      Status: VALIDATED

      Source sequence(s)
      CABZ01080691, FO704685
      UniProtKB/TrEMBL
      A0A0R4IPB8, A0A8M2BKA4, Q5U3D7

    4. NM_001430866.1 → NP_001417795.1  leucine-rich repeat-containing protein 20

      Status: VALIDATED

      Source sequence(s)
      CABZ01080691, FO704685
      UniProtKB/TrEMBL
      A0A0R4IPB8, A0A8M2BKA4, Q5U3D7

    5. NM_001430867.1 → NP_001417796.1  leucine-rich repeat-containing protein 20

      Status: VALIDATED

      Source sequence(s)
      CABZ01080691, FO704685
      UniProtKB/TrEMBL
      A0A0R4IPB8, A0A8M2BKA4, Q5U3D7
      Related
      ENSDARP00000136255.1, ENSDART00000164392.3

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007123.7 Reference GRCz11 Primary Assembly

      Range
      48214603..48240131
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021480061.2 → XP_021335736.1  leucine-rich repeat-containing protein 20 isoform X3

      UniProtKB/TrEMBL
      A0A8M9Q8A6
      Conserved Domains (2) summary
      sd00031
      Location:22 → 47
      LRR_1; leucine-rich repeat [structural motif]
      cl26018
      Location:7 → 130
      NEL; C-terminal novel E3 ligase, LRR-interacting

    2. XM_021480058.2 → XP_021335733.1  leucine-rich repeat-containing protein 20 isoform X3

      UniProtKB/TrEMBL
      A0A8M9Q8A6
      Conserved Domains (2) summary
      sd00031
      Location:22 → 47
      LRR_1; leucine-rich repeat [structural motif]
      cl26018
      Location:7 → 130
      NEL; C-terminal novel E3 ligase, LRR-interacting

    3. XM_021480057.2 → XP_021335732.1  leucine-rich repeat-containing protein 20 isoform X2

      UniProtKB/TrEMBL
      A0A8M9PW68
      Conserved Domains (2) summary
      sd00031
      Location:34 → 59
      LRR_1; leucine-rich repeat [structural motif]
      cl26018
      Location:6 → 142
      NEL; C-terminal novel E3 ligase, LRR-interacting

    4. XM_021480055.2 → XP_021335730.1  leucine-rich repeat-containing protein 20 isoform X1

      UniProtKB/TrEMBL
      A0A8M9QMF3
      Conserved Domains (2) summary
      sd00031
      Location:51 → 76
      LRR_1; leucine-rich repeat [structural motif]
      cl26018
      Location:23 → 159
      NEL; C-terminal novel E3 ligase, LRR-interacting

    5. XM_068224545.1 → XP_068080646.1  leucine-rich repeat-containing protein 20 isoform X3

      UniProtKB/TrEMBL
      A0A8M9Q8A6

    6. XM_021480059.2 → XP_021335734.1  leucine-rich repeat-containing protein 20 isoform X3

      UniProtKB/TrEMBL
      A0A8M9Q8A6
      Conserved Domains (2) summary
      sd00031
      Location:22 → 47
      LRR_1; leucine-rich repeat [structural motif]
      cl26018
      Location:7 → 130
      NEL; C-terminal novel E3 ligase, LRR-interacting

    7. XM_021480060.2 → XP_021335735.1  leucine-rich repeat-containing protein 20 isoform X3

      UniProtKB/TrEMBL
      A0A8M9Q8A6
      Conserved Domains (2) summary
      sd00031
      Location:22 → 47
      LRR_1; leucine-rich repeat [structural motif]
      cl26018
      Location:7 → 130
      NEL; C-terminal novel E3 ligase, LRR-interacting
    Nucleotide Protein Strain
    Heading Accession and Version

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