ssr4 signal sequence receptor, delta [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: ssr4provided by ZNC
Official Full Name: signal sequence receptor, deltaprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-4900
See related: Ensembl:ENSDARG00000019444 AllianceGenome:ZFIN:ZDB-GENE-030131-4900
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:86940; wu:fe06a08
Summary: Acts upstream of or within cellular response to estrogen stimulus. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be active in endomembrane system. Is expressed in several structures, including axis; endocrine system; hatching gland; notochord; and polster. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Iy. Orthologous to human SSR4 (signal sequence receptor subunit 4). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 23

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	23	NC_007134.7 (18569294..18572629, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	23	NC_007134.6 (18642951..18646286, complement)

Chromosome 23 - NC_007134.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

ssr4 (e-PCR), detects polymorphism
- UniSTS:205498

Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within cellular response to estrogen stimulus	IDA Inferred from Direct Assay more info	PubMed

Component	Evidence Code	Pubs
is_active_in endomembrane system	IBA Inferred from Biological aspect of Ancestor more info
located_in endoplasmic reticulum	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: translocon-associated protein subunit delta

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001002082.1 → NP_001002082.1 translocon-associated protein subunit delta precursor

See identical proteins and their annotated locations for NP_001002082.1

Status: PROVISIONAL

Source sequence(s)

BC071553

UniProtKB/TrEMBL

Q6IQ57

Related

ENSDARP00000047174.3, ENSDART00000047175.5

Conserved Domains (1) summary

pfam05404
Location:7 → 167

TRAP-delta; Translocon-associated protein, delta subunit precursor (TRAP-delta)