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    ftr86 finTRIM family, member 86 [ Danio rerio (zebrafish) ]

    Gene ID: 767638, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ftr86provided by ZNC
    Official Full Name
    finTRIM family, member 86provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060929-108
    See related
    Ensembl:ENSDARG00000076839 AllianceGenome:ZFIN:ZDB-GENE-060929-108
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fi29b07; wu:fi29b07; zgc:153258
    Summary
    Predicted to enable zinc ion binding activity. Predicted to be located in cytoplasm. Orthologous to human TRIM29 (tripartite motif containing 29) and TRIM47 (tripartite motif containing 47). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See ftr86 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (506453..516766)
    105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (545650..555950)

    Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene si:ch1073-280e3.1 Neighboring gene nudix hydrolase 8 Neighboring gene proprotein convertase subtilisin/kexin type 7 Neighboring gene transgelin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Transcriptomic Analysis of Zebrafish TDP-43 Transgenic Lines. Lissouba A, et al. Front Mol Neurosci, 2018. PMID 30618614, Free PMC Article
    2. Fish antiviral tripartite motif (TRIM) proteins. Langevin C, et al. Fish Shellfish Immunol, 2019 Mar. PMID 30550990
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC153258

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    finTRIM family, member 86

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001076579.1 → NP_001070047.1  finTRIM family, member 86

      See identical proteins and their annotated locations for NP_001070047.1

      Status: PROVISIONAL

      Source sequence(s)
      BC124291
      UniProtKB/TrEMBL
      Q08CC9
      Conserved Domains (3) summary
      cd00162
      Location:11 → 57
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
      pfam00643
      Location:102 → 140
      zf-B_box; B-box zinc finger
      cd16040
      Location:389 → 574
      SPRY_PRY_SNTX; Stonustoxin subunit alpha or SNTX subunit alpha

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007126.7 Reference GRCz11 Primary Assembly

      Range
      506453..516766
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009291324.4 → XP_009289599.1  finTRIM family, member 86 isoform X1

      See identical proteins and their annotated locations for XP_009289599.1

      UniProtKB/TrEMBL
      A0A8M3APF9, F1R437
      Related
      ENSDARP00000093050.3, ENSDART00000102274.6
      Conserved Domains (3) summary
      cd00162
      Location:11 → 57
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
      pfam00643
      Location:102 → 140
      zf-B_box; B-box zinc finger
      cd16040
      Location:389 → 574
      SPRY_PRY_SNTX; Stonustoxin subunit alpha or SNTX subunit alpha
    Nucleotide Protein
    Heading Accession and Version

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