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    prr11 proline rich 11 [ Danio rerio (zebrafish) ]

    Gene ID: 567366, updated on 9-Dec-2024

    Summary

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    Official Symbol
    prr11provided by ZNC
    Official Full Name
    proline rich 11provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-091118-97
    See related
    Ensembl:ENSDARG00000087393 AllianceGenome:ZFIN:ZDB-GENE-091118-97
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch211-168p1.4
    Summary
    Predicted to be active in cytoplasm and nucleus. Orthologous to human PRR11 (proline rich 11). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See prr11 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (35250418..35257507, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (35306558..35313659, complement)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene yippee-like 2a Neighboring gene SMG8 nonsense mediated mRNA decay factor Neighboring gene serine/threonine/tyrosine interacting-like 1 Neighboring gene transmembrane protein 120Aa

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Slc20a1b is essential for hematopoietic stem/progenitor cell expansion in zebrafish. Chen J, et al. Sci China Life Sci, 2021 Dec. PMID 33751369
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    proline-rich protein 11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      35250418..35257507 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_690659.9 → XP_695751.4  proline-rich protein 11

      UniProtKB/TrEMBL
      A0A8M6Z8W6, A0A8N7UVI4, E7FAB4
      Related
      ENSDARP00000076880.4, ENSDART00000082445.6
    Nucleotide Protein Strain
    Heading Accession and Version

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