armc1l armadillo repeat containing 1, like [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: armc1lprovided by ZNC
Official Full Name: armadillo repeat containing 1, likeprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-9819
See related: Ensembl:ENSDARG00000020887 AllianceGenome:ZFIN:ZDB-GENE-030131-9819
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: cb398; sb:cb398; zgc:56200
Summary: Predicted to enable metal ion binding activity. Predicted to be involved in animal organ development. Predicted to be located in mitochondrial outer membrane. Is expressed in digestive system; pectoral fin musculature; proliferative region; and retina. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 23

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	23	NC_007134.7 (31913349..31919559)
105	previous assembly	GRCz10 (GCF_000002035.5)	23	NC_007134.6 (31986818..31993028)

Chromosome 23 - NC_007134.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in animal organ development	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in mitochondrial outer membrane	IEA Inferred from Electronic Annotation more info
located_in mitochondrion	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: armadillo repeat containing 1, like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_199539.2 → NP_955833.2 armadillo repeat containing 1, like

Status: VALIDATED

Source sequence(s)

BX927210, EH462563, EH532470, EH546723

UniProtKB/TrEMBL

A0A8M1P9L0, F1R385

Related

ENSDARP00000116279.1, ENSDART00000136910.2

Conserved Domains (1) summary

cd00020
Location:7 → 84

ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...