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    R08E3.1 EGF-like domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 180758, updated on 9-Dec-2024

    Summary

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    Official Symbol
    R08E3.1
    Official Full Name
    EGF-like domain-containing protein
    Primary source
    WormBase:WBGene00019957
    Locus tag
    CELE_R08E3.1
    See related
    AllianceGenome:WB:WBGene00019957
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable Notch binding activity. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See R08E3.1 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    46
    Sequence:
    Chromosome: X; NC_003284.9 (4822647..4834885)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene CCDC22 N-terminal domain-containing protein Neighboring gene GATOR2 complex protein MIO zinc-ribbon like domain-containing protein Neighboring gene Adducin-related protein 1;Class II aldolase/adducin N-terminal domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables Notch binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    EGF-like domain-containing protein
    NP_001338800.1
    • Confirmed by transcript evidence
    NP_001367835.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      4822647..4834885
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001380951.1 → NP_001367835.1  EGF-like domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q7Z1P7

    2. NM_001351880.3 → NP_001338800.1  EGF-like domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q21850
    Nucleotide Protein
    Heading Accession and Version

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