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    Fam177a family with sequence similarity 177, member A [ Mus musculus (house mouse) ]

    Gene ID: 73385, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Fam177aprovided by MGI
    Official Full Name
    family with sequence similarity 177, member Aprovided by MGI
    Primary source
    MGI:MGI:1920635
    See related
    Ensembl:ENSMUSG00000095595 AllianceGenome:MGI:1920635
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C14orf24; Fam177a1; 1700047I17Rik; D730001C10Rik; 1700047I17Rik1
    Summary
    Orthologous to human FAM177A1 (family with sequence similarity 177 member A1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in testis adult (RPKM 16.2), CNS E18 (RPKM 12.4) and 27 other tissues See more
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    Genomic context

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    See Fam177a in Genome Data Viewer
    Location:
    12 C1; 12 23.87 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (55171313..55188889)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (55124435..55142104)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 2700097O09 gene Neighboring gene RNA polymerase II, polypeptide H Neighboring gene signal recognition particle 54A Neighboring gene STARR-positive B cell enhancer mm9_chr12:56256085-56256386 Neighboring gene predicted gene 2436 Neighboring gene signal recognition particle 54B Neighboring gene family with sequence similarity 177 member A2 Neighboring gene predicted gene 2446

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Neuron-specific protein network mapping of autism risk genes identifies shared biological mechanisms and disease-relevant pathologies. Murtaza N, et al. Cell Rep, 2022 Nov 22. PMID 36417873
    2. BioID screening of biotinylation sites using the avidin-like protein Tamavidin 2-REV identifies global interactors of stimulator of interferon genes (STING). Motani K, et al. J Biol Chem, 2020 Aug 7. PMID 32554809, Free PMC Article
    3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    protein FAM177A1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028527.2 → NP_082803.1  protein FAM177A1

      See identical proteins and their annotated locations for NP_082803.1

      Status: VALIDATED

      Source sequence(s)
      AC157515
      Consensus CDS
      CCDS25913.1
      UniProtKB/Swiss-Prot
      Q8BR63, Q9D9M7
      UniProtKB/TrEMBL
      Q3TVY3
      Related
      ENSMUSP00000137299.2, ENSMUST00000177768.3
      Conserved Domains (1) summary
      pfam14774
      Location:35 → 139
      FAM177; FAM177 family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      55171313..55188889
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8BR63.1 GenPept UniProtKB/Swiss-Prot:Q8BR63

    Gene LinkOut

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    Chemical Information
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