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    Itprid1 ITPR interacting domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 232016, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Itprid1provided by MGI
    Official Full Name
    ITPR interacting domain containing 1provided by MGI
    Primary source
    MGI:MGI:2685304
    See related
    Ensembl:ENSMUSG00000037973 AllianceGenome:MGI:2685304
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm458; Ccdc129; D530004J12Rik
    Summary
    Predicted to enable signaling receptor binding activity. Orthologous to human ITPRID1 (ITPR interacting domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    human all
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    Genomic context

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    See Itprid1 in Genome Data Viewer
    Location:
    6 B3; 6 27.65 cM
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (55782306..55955872)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (55805290..55978743)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene predicted gene 3279 Neighboring gene STARR-seq mESC enhancer starr_15981 Neighboring gene predicted gene, 38820 Neighboring gene STARR-seq mESC enhancer starr_15982 Neighboring gene STARR-seq mESC enhancer starr_15983 Neighboring gene protein phosphatase 1, regulatory subunit 17 Neighboring gene ribosomal protein L17 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    enables signaling receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    protein ITPRID1
    Names
    ITPR-interacting domain-containing protein 1
    coiled-coil domain containing 129
    coiled-coil domain-containing protein 129

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081665.2 → NP_001075134.1  protein ITPRID1 isoform 1

      See identical proteins and their annotated locations for NP_001075134.1

      Status: VALIDATED

      Source sequence(s)
      AC079365, AC084163
      Consensus CDS
      CCDS39493.1
      UniProtKB/Swiss-Prot
      Q14B48, Q8BUH5
      Related
      ENSMUSP00000045332.7, ENSMUST00000044729.7
      Conserved Domains (2) summary
      pfam14722
      Location:114 → 256
      KRAP_IP3R_bind; Ki-ras-induced actin-interacting protein-IP3R-interacting domain
      pfam14723
      Location:829 → 908
      SSFA2_C; Sperm-specific antigen 2 C-terminus

    2. NM_001418173.1 → NP_001405102.1  protein ITPRID1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC079365, AC084163
      Related
      ENSMUST00000169699.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      55782306..55955872
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017321524.3 → XP_017177013.1  protein ITPRID1 isoform X2

      UniProtKB/Swiss-Prot
      Q14B48, Q8BUH5
      Conserved Domains (2) summary
      pfam14722
      Location:114 → 256
      KRAP_IP3R_bind; Ki-ras-induced actin-interacting protein-IP3R-interacting domain
      pfam14723
      Location:829 → 908
      SSFA2_C; Sperm-specific antigen 2 C-terminus

    2. XM_006505946.5 → XP_006506009.1  protein ITPRID1 isoform X1

      See identical proteins and their annotated locations for XP_006506009.1

      Conserved Domains (1) summary
      pfam14722
      Location:114 → 256
      KRAP_IP3R_bind; Ki-ras-induced actin-interacting protein-IP3R-interacting domain

    3. XM_006505949.5 → XP_006506012.1  protein ITPRID1 isoform X3

      Conserved Domains (1) summary
      pfam14722
      Location:114 → 256
      KRAP_IP3R_bind; Ki-ras-induced actin-interacting protein-IP3R-interacting domain

    4. XM_006505947.3 → XP_006506010.1  protein ITPRID1 isoform X1

      See identical proteins and their annotated locations for XP_006506010.1

      Conserved Domains (1) summary
      pfam14722
      Location:114 → 256
      KRAP_IP3R_bind; Ki-ras-induced actin-interacting protein-IP3R-interacting domain

    5. XM_006505950.2 → XP_006506013.1  protein ITPRID1 isoform X4

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q14B48.1 GenPept UniProtKB/Swiss-Prot:Q14B48

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