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    Ccdc160 coiled-coil domain containing 160 [ Mus musculus (house mouse) ]

    Gene ID: 434778, updated on 9-Dec-2024

    Summary

    Official Symbol
    Ccdc160provided by MGI
    Official Full Name
    coiled-coil domain containing 160provided by MGI
    Primary source
    MGI:MGI:3588225
    See related
    Ensembl:ENSMUSG00000073207 AllianceGenome:MGI:3588225
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    6330534C20Rik
    Summary
    Orthologous to human CCDC160 (coiled-coil domain containing 160). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in placenta adult (RPKM 1.1), CNS E11.5 (RPKM 1.0) and 13 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Ccdc160 in Genome Data Viewer
    Location:
    X A5; X 29.19 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (51880045..51888351)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (52791200..52799474)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene predicted gene 14586 Neighboring gene STARR-seq mESC enhancer starr_47186 Neighboring gene ribosomal protein L36 pseudogene Neighboring gene STARR-seq mESC enhancer starr_47189 Neighboring gene STARR-seq mESC enhancer starr_47191 Neighboring gene POU domain, class 5, transcription factor 1, related sequence 8 Neighboring gene ribosomal protein L9 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Gene trapped (1) 
    • Targeted (1) 

    General gene information

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    is_active_in cellular_component  

    General protein information

    Preferred Names
    coiled-coil domain-containing protein 160

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034059.2NP_001029231.1  coiled-coil domain-containing protein 160

      See identical proteins and their annotated locations for NP_001029231.1

      Status: VALIDATED

      Source sequence(s)
      BX936351
      Consensus CDS
      CCDS30126.1
      UniProtKB/Swiss-Prot
      Q3UYG1
      Related
      ENSMUSP00000099121.2, ENSMUST00000101588.2
      Conserved Domains (1) summary
      COG1196
      Location:149301
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      51880045..51888351
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006541511.1XP_006541574.1  coiled-coil domain-containing protein 160 isoform X1

      See identical proteins and their annotated locations for XP_006541574.1

      UniProtKB/Swiss-Prot
      Q3UYG1
      Conserved Domains (1) summary
      COG1196
      Location:149301
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
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