U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Cimap1c ciliary microtubule associated protein 1C [ Rattus norvegicus (Norway rat) ]

    Gene ID: 315695, updated on 9-Dec-2024

    Summary

    Official Symbol
    Cimap1cprovided by RGD
    Official Full Name
    ciliary microtubule associated protein 1Cprovided by RGD
    Primary source
    RGD:1304976
    See related
    EnsemblRapid:ENSRNOG00000027109 AllianceGenome:RGD:1304976
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Odf3l1; RGD1304976
    Summary
    Predicted to be active in cytoskeleton. Orthologous to human CIMAP1C (ciliary microtubule associated protein 1C). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 31.2), Uterus (RPKM 12.1) and 6 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Cimap1c in Genome Data Viewer
    Location:
    8q24
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (66144726..66176985, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (57248746..57281084, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (61516249..61542946, complement)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat and Ig domain containing 1 Neighboring gene ATP synthase subunit g, mitochondrial-like Neighboring gene uncharacterized LOC134480055 Neighboring gene transfer RNA proline (anticodon AGG) 41 Neighboring gene chondroitin sulfate proteoglycan 4 Neighboring gene ribosomal protein S15a like 7 Neighboring gene sorting nexin 33

    Genomic regions, transcripts, and products

    General protein information

    Preferred Names
    protein CIMAP1C
    Names
    outer dense fiber of sperm tails 3-like 1
    outer dense fiber protein 3-like protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108151.2NP_001101621.1  protein CIMAP1C isoform 1

      See identical proteins and their annotated locations for NP_001101621.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000008
      UniProtKB/TrEMBL
      A6J4R5, D4A5D6
      Related
      ENSRNOP00000108775.1, ENSRNOT00000162852.1
    2. NM_001429217.1NP_001416146.1  protein CIMAP1C isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000008
    3. NM_001429218.1NP_001416147.1  protein CIMAP1C isoform 3

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000008
    4. NM_001429219.1NP_001416148.1  protein CIMAP1C isoform 4

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000008
      UniProtKB/TrEMBL
      A0A8I6AQG6, D4A5D6

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      66144726..66176985 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039081470.2XP_038937398.1  protein CIMAP1C isoform X1

      Related
      ENSRNOP00000096167.1, ENSRNOT00000119897.2
    2. XM_039081471.2XP_038937399.1  protein CIMAP1C isoform X2

      UniProtKB/TrEMBL
      A6J4R5, D4A5D6
      Related
      ENSRNOP00000108045.1, ENSRNOT00000122129.1
    3. XM_017595651.3XP_017451140.1  protein CIMAP1C isoform X2

      UniProtKB/TrEMBL
      A6J4R5, D4A5D6
    4. XM_063265476.1XP_063121546.1  protein CIMAP1C isoform X2

      UniProtKB/TrEMBL
      A6J4R5, D4A5D6
    5. XM_006243122.4XP_006243184.1  protein CIMAP1C isoform X2

    6. XM_039081472.2XP_038937400.1  protein CIMAP1C isoform X3