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    Gm38413 predicted gene, 38413 [ Mus musculus (house mouse) ]

    Gene ID: 330133, updated on 22-Oct-2024

    Summary

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    Official Symbol
    Gm38413provided by MGI
    Official Full Name
    predicted gene, 38413provided by MGI
    Primary source
    MGI:MGI:5621298
    See related
    Ensembl:ENSMUSG00000105218 AllianceGenome:MGI:5621298
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm43248; A830083F22
    Expression
    Biased expression in cortex adult (RPKM 1.1), frontal lobe adult (RPKM 0.9) and 4 other tissues See more
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    Genomic context

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    See Gm38413 in Genome Data Viewer
    Location:
    5; 5 E4
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (99878713..99901832, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (99730854..99753973, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA A930011G23 gene Neighboring gene RIKEN cDNA 4930405H06 gene Neighboring gene STARR-seq mESC enhancer starr_13710 Neighboring gene STARR-seq mESC enhancer starr_13711 Neighboring gene predicted gene 16226 Neighboring gene STARR-seq mESC enhancer starr_13713 Neighboring gene STARR-seq mESC enhancer starr_13714 Neighboring gene STARR-seq mESC enhancer starr_13715 Neighboring gene predicted gene, 42126 Neighboring gene STARR-positive B cell enhancer mm9_chr5:100335210-100335511 Neighboring gene vesicle-associated membrane protein 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_131054.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK044041
      Related
      ENSMUST00000198449.6

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      99878713..99901832 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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