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    Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817349, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pentatricopeptide repeat (PPR) superfamily protein
    Primary source
    TAIR:AT2G28050
    Locus tag
    AT2G28050
    See related
    Araport:AT2G28050
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    RNA processing factor 7; RPF7; T1E2.3; T1E2_3
    Summary
    Encodes a relatively short regular p-class pentatricopeptide repeat protein comprising seven canonical p repeats and a single short s repeat that is necessary for the 5'-processing and stability of nad2 mRNA in mitochondria.
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (11937871..11939653, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene mediator of RNA polymerase II transcription subunit Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene pseudo Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RNA processing factor 7 and polynucleotide phosphorylase are necessary for processing and stability of nad2 mRNA in Arabidopsis mitochondria. Stoll B, et al. RNA Biol, 2014. PMID 25181358, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Authors show that At2g28050 encodes RPF7 and is required for post-transcriptional nad2 mRNA maturation.
      Title: RNA processing factor 7 and polynucleotide phosphorylase are necessary for processing and stability of nad2 mRNA in Arabidopsis mitochondria.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    • At2g28050_Arabidopsis_lyrata_ssp._lyrata_CAN1 (e-PCR)
    • At2g28050_Arabidopsis_lyrata_ssp._petraea_GER1 (e-PCR)

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within mitochondrial mRNA 5'-end processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Pentatricopeptide repeat (PPR) superfamily protein
    NP_180372.1
    • Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT2G32630.1); Has 27131 Blast hits to 10367 proteins in 260 species: Archae - 1; Bacteria - 82; Metazoa - 143; Fungi - 90; Plants - 26257; Viruses - 0; Other Eukaryotes - 558 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      11937871..11939653 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128364.2 → NP_180372.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180372.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZUU7
      UniProtKB/TrEMBL
      A0A5S9X2D9, A0A654EWU5
      Conserved Domains (3) summary
      PLN03218
      Location:221 → 424
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:283 → 310
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:142 → 178
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZUU7.1

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