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    FIS2 VEFS-Box of polycomb protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818136, updated on 14-Nov-2024

    Summary

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    Official Symbol
    FIS2
    Official Full Name
    VEFS-Box of polycomb protein
    Primary source
    TAIR:AT2G35670
    Locus tag
    AT2G35670
    See related
    Araport:AT2G35670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    FERTILIZATION INDEPENDENT SEED 2; FERTILIZATION-INDEPENDENT ENDOSPERM 2; FERTILIZATION-INDEPENDENT SEED 2 PROTEIN; FIE2; T20F21.14; T20F21_14
    Summary
    Encodes a negative regulator of seed development in the absence of pollination. In the ovule, the FIS2 transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization.
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    Genomic context

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    See FIS2 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    13
    Sequence:
    Chromosome: 2; NC_003071.7 (14992565..14996756)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene FAD/NAD(P)-binding oxidoreductase family protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Phosphotyrosine protein phosphatases superfamily protein Neighboring gene ncRNA Neighboring gene acyl-CoA oxidase 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genes controlling fertilization-independent seed development in Arabidopsis thaliana. Luo M, et al. Proc Natl Acad Sci U S A, 1999 Jan 5. PMID 9874812, Free PMC Article
    2. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Zhang S, et al. Plant Physiol, 2018 May. PMID 29523711, Free PMC Article
    3. Maintenance of DNA methylation during the Arabidopsis life cycle is essential for parental imprinting. Jullien PE, et al. Plant Cell, 2006 Jun. PMID 16648367, Free PMC Article
    4. Expression and parent-of-origin effects for FIS2, MEA, and FIE in the endosperm and embryo of developing Arabidopsis seeds. Luo M, et al. Proc Natl Acad Sci U S A, 2000 Sep 12. PMID 10962025, Free PMC Article
    5. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_129122.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA methylation-dependent constitutive heterochromatin formation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of endosperm development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    VEFS-Box of polycomb protein
    NP_565815.2
    • FERTILIZATION INDEPENDENT SEED 2 (FIS2); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Polycomb protein, VEFS-Box (InterPro:IPR019135); BEST Arabidopsis thaliana protein match is: VEFS-Box of polycomb protein (TAIR:AT4G16845.2); Has 12278 Blast hits to 7688 proteins in 680 species: Archae - 7; Bacteria - 1319; Metazoa - 4326; Fungi - 1979; Plants - 496; Viruses - 125; Other Eukaryotes - 4026 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      14992565..14996756
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129122.3 → NP_565815.2  VEFS-Box of polycomb protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565815.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P0DKJ8, Q0QMM9, Q9ZNT9, Q9ZQP0
      UniProtKB/TrEMBL
      A0A5S9X481, A0A654F9T1
      Conserved Domains (1) summary
      pfam09733
      Location:589 → 726
      VEFS-Box; VEFS-Box of polycomb protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0DKJ8.1

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